Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40495
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.36 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 731 RRRWIHFEDTILDGKDGHVEGTAAEVKDKYISFSST 624
           RRRW  ++DT+  G       TA      Y +FSS+
Sbjct: 43  RRRWKQYQDTLYSGTRSSESLTAQAHHRLYPAFSSS 78


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 504 VLNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 611
           VL   Q +A K A  +   N   II+EPT     YG
Sbjct: 348 VLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,200
Number of Sequences: 438
Number of extensions: 5484
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)