Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40493
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 54 2e-07
04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798 34 0.16
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455... 33 0.36
10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632... 31 1.4
05_03_0270 - 11337212-11337418,11337448-11337606,11337696-113377... 31 1.4
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 30 1.9
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 30 2.5
03_05_0182 - 21679813-21680127 29 3.3
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685... 29 4.4
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 4.4
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 29 5.8
02_02_0442 - 10318576-10319109 29 5.8
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930... 28 7.7
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 28 7.7
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 28 7.7
01_06_1261 - 35826513-35828941,35829201-35829294 28 7.7
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Frame = +3
Query: 513 RLKSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVAT 692
+L+ K++DY ERAKR EE PL++++ +++ +K EQ++ IE + A D+
Sbjct: 721 KLQKTGKQMDYLERAKRQEEAPLIEQAFQKRLEVEKILHEQEQLREIELSKQHHAGDLQE 780
Query: 693 SERMSRMAVHRD 728
R+SRM H++
Sbjct: 781 KNRLSRMLEHKN 792
>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
Length = 575
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 501 RASARLKSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLI 665
R +R+K Q+K+ R +EI + Q LEE Q DK E+++ E E+L+
Sbjct: 44 RELSRIKKQKKEKSLAIETPRTQEIKIEQIKLEENQKFDKVLSEEEQWEVNERLL 98
>07_03_0356 -
17142019-17142899,17145251-17145290,17145381-17145512,
17145762-17145815,17145913-17145993,17146860-17146955,
17147439-17147611,17147750-17147823,17148515-17148622,
17148693-17148868,17149305-17149352,17150665-17150775,
17152172-17152226,17153434-17153534,17154176-17154290,
17155505-17155698
Length = 812
Score = 32.7 bits (71), Expect = 0.36
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 480 RTDEGTSRASARLKSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQ 659
+TD + RL S++KK++ E K+ E +K +E Q Q + +Q+KE+IE
Sbjct: 652 KTDAHMHKIKGRLLSEKKKIEEAEERKKARE---AKKRAKEVQAQKEKERAKQKKEQIES 708
Query: 660 L 662
+
Sbjct: 709 V 709
>10_08_0672 +
19762340-19762432,19762543-19762735,19763225-19763269,
19763381-19763432,19763601-19763704,19763887-19763987,
19764225-19764283,19764536-19764592,19764944-19764989,
19765187-19765266,19766841-19767096,19767210-19767405,
19768368-19768448,19768536-19768587,19768759-19768862,
19769586-19769686,19769924-19769982,19770491-19770536,
19770789-19770868,19770953-19771013
Length = 621
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 685 WPRRSACPAWRSTATIHGATSLGTWGRLRS 774
WP P W+ T ++ T+LGT R+ S
Sbjct: 451 WPSEERLPCWKETMKLYRGTALGTGKRILS 480
>05_03_0270 -
11337212-11337418,11337448-11337606,11337696-11337770,
11337926-11338004,11338096-11338144,11338243-11338426,
11338511-11338609,11338742-11338840
Length = 316
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 489 EGTSRASARLKSQEKKVDYFERAK-RLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLI 665
E SRA+ L E +D E + + EEI L KSL V++K F E +E ++ L
Sbjct: 39 EEYSRANKELHKLESTMDMIEELRSKQEEIEGL-KSLMTNSVEEKDFREMAAQELLQALE 97
Query: 666 EARAL 680
E + L
Sbjct: 98 EEKQL 102
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +3
Query: 492 GTSRASARLKSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEA 671
G RA +Q K+VD+ + LEE+ K E+ E Q+K E++ +
Sbjct: 296 GQKRAKKLQYAQSKEVDHID----LEELDKFSKLQNEQNANRLKVLEIQQKLSSEKIEQT 351
Query: 672 RALDVATSERMSRMAVHRD 728
+ +A E+M V R+
Sbjct: 352 KISHLAAKEQMEAAKVQRE 370
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +3
Query: 495 TSRASARLKSQEKKVDYFERAKRLEEIPLLQKSLEEK-QVQDKAFWEQQEKERIEQ---L 662
T+R S R + + KK E L QK+ EE+ +QD + + R+E+ L
Sbjct: 307 TARDSLRQREEAKKKQAELTELENEATELKQKNEEERVAIQDMEALLIKRRRRVEKCRRL 366
Query: 663 IEARALDVATSERMSRMAVHRDDSWRDFARNVGAPT 770
EA++ A E+M R A+H+ +++ R A T
Sbjct: 367 AEAQSNYKAVLEKMIRDAMHQSVVYKEQLRMNQAAT 402
>03_05_0182 - 21679813-21680127
Length = 104
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +3
Query: 492 GTSRASARLKSQEKKVDYF--ERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLI 665
G +R AR + Q K Y +RAK +++ ++ S ++++ +K + +EK R E L
Sbjct: 12 GFTRFKARFQPQHTKPRYVTKQRAKIMDQDSKMEASDKKQEESEKWREQSEEKSRAEFL- 70
Query: 666 EARALDVATSERMSRMAVHRDDSWRDFARNV 758
L V R+ + H DD +D +
Sbjct: 71 ---TLQVKVESRICEVEKH-DDLMQDLVEEL 97
>03_06_0071 +
31465707-31466237,31467455-31468075,31468438-31468520,
31468895-31468979
Length = 439
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 519 KSQEKKVDYFERAKRLEEIPLLQKSLE-EKQV-QDKAFWEQQEKERIEQLIEARALDV 686
K+Q+ K F +AK + IPL++ LE E+ + ++ WE K + +++ ALDV
Sbjct: 311 KTQDSKSMQFIQAK-VTSIPLIKFRLELERDITEEDGIWENISKWKTVPMVQRVALDV 367
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 519 KSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQD-KAFWEQQEKERIEQLIE 668
+S+E++ ER +R E K+L EK +D + WEQ+E+ RI + ++
Sbjct: 797 ESEERRKARLERHQRTME--RAAKALAEKNERDLQVQWEQEERHRIGETLD 845
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 361 LKERMAHISQTAHGQKMLGKLNEEDLKKMDAEAIAQ 468
+KE+ I Q HGQ M ++N++D+ + + + +Q
Sbjct: 275 VKEKDLEIEQLKHGQPMTSQINKKDINQKNRKCRSQ 310
>02_02_0442 - 10318576-10319109
Length = 177
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 817 PSRLESFSLKAATFLSVGAPTFRAKSRHESSRWTAMRDMRSDVAT 683
PS S S + +T +VG P A RH+ RW ++R++ A+
Sbjct: 111 PSPPPSLSPEPST-AAVGEPPAAAHRRHQGGRWRPRPEVRAEAAS 154
>09_06_0257 +
21891523-21891578,21891911-21892421,21893021-21893092,
21893571-21893875,21894085-21894196,21894514-21894750,
21894933-21895640
Length = 666
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +3
Query: 555 AKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVATSERMSRMAVHRDDS 734
+KRLEE L Q+ +EE + E Q +R+ + ++ + L E S + D
Sbjct: 359 SKRLEEWRLRQRDMEEWMRHHQLPDELQ--DRVRRFVQVKWLATRGVEEESILQALPADI 416
Query: 735 WRDFARNVGAPTLKKVAAFNE 797
RD R++ +++V F+E
Sbjct: 417 RRDVQRHLCLDLVRRVPFFSE 437
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 624 TPCLEPVSLPGSSAEVVSLPIAWHA 550
T LEPV S +EV+++P+ W A
Sbjct: 735 TAALEPVKCSFSFSEVINVPLGWQA 759
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 543 YFERAKRLEEIPLLQKSLEEKQ---VQDKAFWEQQEKERIEQLIEARALDVATSERMSRM 713
Y + LEE+P S +K Q+K W+Q+ +E +Q + ++ + RM ++
Sbjct: 740 YANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHREEQQQQFQNQSKEQEQERRMQKL 799
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +3
Query: 486 DEGTSRASARLKSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQL- 662
+ GTS A R ++ +K + K EEI LQK + Q + + F E + L
Sbjct: 127 NRGTSAAPKRTQTHKKISSKMSKDKAQEEIERLQKKILVLQTEKEFFKSSYESSLNKYLS 186
Query: 663 IEARALDV-----ATSERMSRMAVHRDDSWR 740
IE +A ++ + E S AV D+ R
Sbjct: 187 IERQAAEMQEEVWSLQETFSTSAVIEDNEAR 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,944,112
Number of Sequences: 37544
Number of extensions: 251329
Number of successful extensions: 1033
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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