Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40492
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   104   1e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   103   3e-23
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    33   0.029
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   1.4  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   3.3  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.3  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   4.4  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.7  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.7  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  104 bits (249), Expect = 1e-23
 Identities = 46/90 (51%), Positives = 69/90 (76%)
 Frame = +1

Query: 244 FPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 423
           F +++L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RVF I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140

Query: 424 GFTNKDSLSQRKTCYAQHTQVRAIRKKMLK 513
           GFT + +   +KT YAQ +Q+RAIR+KM +
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKMFQ 170



 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 40/66 (60%), Positives = 51/66 (77%)
 Frame = +2

Query: 56  IVDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 235
           +VDPF+RK+WYD++AP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 236 ERSFRK 253
           E +FRK
Sbjct: 78  EHAFRK 83



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 23/55 (41%), Positives = 40/55 (72%)
 Frame = +3

Query: 510 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 674
           ++I    ++  +RE+V KLIP+ I ++IE+A   I+PL++V +RKVK+LK P+ +
Sbjct: 170 QVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHD 224


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  103 bits (246), Expect = 3e-23
 Identities = 45/90 (50%), Positives = 68/90 (75%)
 Frame = +1

Query: 244 FPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 423
           F +++L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+F I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140

Query: 424 GFTNKDSLSQRKTCYAQHTQVRAIRKKMLK 513
           GFT++     +KT YAQ +Q+RAI +KM +
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKMFQ 170



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 42/66 (63%), Positives = 51/66 (77%)
 Frame = +2

Query: 56  IVDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 235
           +VDPF+RKDWYD++AP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 236 ERSFRK 253
           E SFRK
Sbjct: 78  EHSFRK 83



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = +3

Query: 510 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 674
           ++I        ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ +
Sbjct: 170 QVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHD 224


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 417  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENVEIITRDVTNSELREVVNKL 566
            LHW+    L+  +Q +  P H+GQ  S  + NVE +   V   E   +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 510 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 641
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 262 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 393
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 357 LPFFNHPPELIGCEVHAVEVAEHITS 280
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 302 KLQSTLRPCTYSAINLICGKTFPRQCQLVDQP 207
           KL STLR   Y+AIN       P Q + VD P
Sbjct: 117 KLDSTLRVLDYNAINKFSIDLTPVQRKHVDMP 148


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 334 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 471
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 313 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 411
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,604
Number of Sequences: 5004
Number of extensions: 59824
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)