Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40492
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 128 5e-30
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 126 2e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 125 3e-29
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 3.4
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.0
02_02_0613 - 12145489-12145590,12145698-12145761,12146180-12146721 28 6.0
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359... 28 7.9
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 7.9
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 128 bits (308), Expect = 5e-30
Identities = 58/92 (63%), Positives = 75/92 (81%)
Frame = +1
Query: 238 KVFPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 417
+ + +IRL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 418 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMLK 513
CIGFT + ++TCYAQ +Q+R IR+KM++
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 99.1 bits (236), Expect = 3e-21
Identities = 46/65 (70%), Positives = 56/65 (86%)
Frame = +2
Query: 59 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 238
VDPF +KDWYD++APS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 239 RSFRK 253
+++RK
Sbjct: 79 QAYRK 83
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/61 (44%), Positives = 47/61 (77%)
Frame = +3
Query: 495 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 674
+++ VEI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 675 I 677
+
Sbjct: 225 L 225
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 126 bits (304), Expect = 2e-29
Identities = 57/92 (61%), Positives = 74/92 (80%)
Frame = +1
Query: 238 KVFPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 417
+ + ++RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 418 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMLK 513
CIGFT + ++TCYAQ +Q+R IR+KM++
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/65 (70%), Positives = 57/65 (87%)
Frame = +2
Query: 59 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 238
VDPF++KDWYD++AP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 239 RSFRK 253
+++RK
Sbjct: 79 QAYRK 83
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/61 (44%), Positives = 46/61 (75%)
Frame = +3
Query: 495 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 674
+++ VEI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFD 224
Query: 675 I 677
+
Sbjct: 225 L 225
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 125 bits (302), Expect = 3e-29
Identities = 57/92 (61%), Positives = 74/92 (80%)
Frame = +1
Query: 238 KVFPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 417
+ + +IRL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 418 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMLK 513
CIGFT + ++TCYAQ +Q+R IR+KM++
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +2
Query: 59 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 238
VDPF +KDWYD++APS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 239 RSFRK 253
+++RK
Sbjct: 79 QAYRK 83
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/61 (44%), Positives = 47/61 (77%)
Frame = +3
Query: 495 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 674
+++ VEI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 675 I 677
+
Sbjct: 225 L 225
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 549 EVVNKLIPDSIAKDIEKACHGIYPLRD 629
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 293 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 382
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>02_02_0613 - 12145489-12145590,12145698-12145761,12146180-12146721
Length = 235
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +3
Query: 414 LLHWFHQ*GLLEPTQDVLRPAHSGQSNQKENVEIITRDVTNSELREVVNKLIPDSIAKDI 593
LLH+ + L E DV+ H + + NVE + + + + ++ ++A
Sbjct: 58 LLHFIYTDALPETALDVVMTQHLLVAADRYNVERLKLICEEKLSKHIDSNMVATTLALAE 117
Query: 594 EKACHGIYPLRDVCIR 641
+ +CHG L++ C +
Sbjct: 118 QHSCHG---LKEACFK 130
>10_08_1045 -
22535516-22535593,22535681-22535756,22535843-22535946,
22536048-22536176,22536539-22536700,22537029-22537259,
22537345-22537428,22537515-22537583,22537671-22537739,
22537827-22537889,22537913-22538052,22538527-22539097
Length = 591
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 384 EDNRWIRSTCLLHWFHQ*GLLEPTQDVLRPAHSGQSNQKENVEIITRDVTNSELRE 551
E+N WI S H+F +++ + + S Q + +NV+ ITRD S+ E
Sbjct: 220 ENNLWI-SMMYEHYFGPANIVDDITLAIECSKSSQIQKDKNVQDITRDSEESKQSE 274
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 202 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 110
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,214,493
Number of Sequences: 37544
Number of extensions: 419216
Number of successful extensions: 1257
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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