Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40491
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 19/87 (21%), Positives = 37/87 (42%)
 Frame = -2

Query: 516 SGWVSGALNLSAAAMVACVDKSSILASPKTM*VSE*GFLYTSGELMTKRMFFDFLIVTLS 337
           SGW  GA++ SA  ++  +    +        V     +  SG  ++  +    L+  L 
Sbjct: 654 SGWAIGAMSFSATGILITLFVCGVFLKHNDTPV-----VRASGRELSYVLLSGILLCYLV 708

Query: 336 TPCTGLRPSLLIIFLAFFSPRDCFDLL 256
           T    LRP+ ++  +  F+   CF ++
Sbjct: 709 TFALVLRPTDIVCGIQRFAAGFCFTVV 735


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 362 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 493
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 362 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 493
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 715 CRRSLRHNILCHCC*F 762
           CR       LCHCC F
Sbjct: 737 CRYEAHCFALCHCCDF 752


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 504 SGALNLSAAAMVACVDKSSILASP 433
           SG  +   AA+ A V  SSI++SP
Sbjct: 371 SGKKSKFNAAVAAAVQSSSIVSSP 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,373
Number of Sequences: 438
Number of extensions: 3352
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)