Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40490
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 69 8e-13
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 38 0.002
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 27 2.5
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.3
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 26 5.7
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 26 5.7
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 7.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 7.5
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 7.5
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 9.9
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 68.9 bits (161), Expect = 8e-13
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +1
Query: 19 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 195
M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ + VD A GR K Y + G +
Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59
Query: 196 R 198
R
Sbjct: 60 R 60
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 204 GESDDCIVRLTKKDGIL 254
GESDDCI RLT +DG+L
Sbjct: 63 GESDDCINRLTTQDGLL 79
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/79 (25%), Positives = 41/79 (51%)
Frame = +2
Query: 518 LVTLLRNVSRPYLFSNXXXXXXXXXSLKSLDLVERSGELRQRLRQNTTAFREGLKAAGLT 697
LV ++R+++ ++F+ +L +++ ++ S R++ R ++ L G+
Sbjct: 392 LVDMIRSLAPGFIFTTSLPPHVMVGALTAVEHLKVSNVEREQQRSAVRRVKQSLSEIGIP 451
Query: 698 VAGDDHPICPVMVGEASLA 754
V +D I P MVG+A LA
Sbjct: 452 VLSNDTHIVPAMVGDAHLA 470
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 638 QRLRQNTTAFREGLKAAGLTVAG-DDHPICPVMV 736
+RL N+ R GLK G + G DD P+ P+++
Sbjct: 459 ERLAFNSRYIRLGLKRLGFIIFGNDDSPVVPLLL 492
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 149 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 6
P+ A+T TE W++A+ +A F S C Y+R
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLR 529
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 726 GQMGWSSPATVRPAAFSPSRKAVVF 652
G +GWS P+ A +P R VVF
Sbjct: 423 GHIGWSVPSAFGYAIGAPKRNVVVF 447
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 509 AGCIAASRSTHCFAQGRTDDIRRPHNTAILF--SASASFP 396
A CI A++S CF +D I + H +I S S+SFP
Sbjct: 181 AKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFP 220
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -3
Query: 170 LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 6
L VS+ S ++ W+ W L E F+ + TN+ + Y+R
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYIR 224
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 119 SCTEAWSLAWMRRLLAEHFLGQYKST 42
S T+A SL W + +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 726 GQMGWSSPATVRPAAFSPSRKAVV 655
G +GWS P+ + A +P R+ +V
Sbjct: 419 GHIGWSVPSAMGYAVAAPERRTIV 442
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 101 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 9
SL M +L EH+ G++ SP CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,282
Number of Sequences: 5004
Number of extensions: 56710
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -