Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40489
         (799 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029428-1|ABK57085.1|  710|Drosophila melanogaster IP09654p pro...    29   7.4  
AY118327-1|AAM48356.1|  340|Drosophila melanogaster LD21120p pro...    29   9.7  
AY051956-1|AAK93380.1|  258|Drosophila melanogaster LD42595p pro...    29   9.7  
AF170829-4|AAD49741.1|  340|Drosophila melanogaster putative mRN...    29   9.7  
AE014297-2617|AAF55627.1|  340|Drosophila melanogaster CG6011-PA...    29   9.7  
AE014297-908|AAN13416.1|  258|Drosophila melanogaster CG8121-PC,...    29   9.7  
AE014297-907|AAN13415.1|  258|Drosophila melanogaster CG8121-PB,...    29   9.7  
AE014297-906|AAF54359.1|  258|Drosophila melanogaster CG8121-PA,...    29   9.7  

>BT029428-1|ABK57085.1|  710|Drosophila melanogaster IP09654p
           protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 140 FLIS*AGHGCLWLS*FCKVQLNIKHSISFLAGSSQWVAFRSGR 12
           FL S A    L++  FC  QL +   ++ + GS  ++  RSG+
Sbjct: 249 FLQSPANPDLLYIIFFCHTQLTVTLLLALIFGSKVYIVLRSGK 291


>AY118327-1|AAM48356.1|  340|Drosophila melanogaster LD21120p
           protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 445 ITNILLLVTLQNKHIPNYT*SKLVTFQYTMW-VQYFQTKAFVMPIF 311
           IT +  L+ L N  I NY+  + ++ +  M  V Y QTK +V P+F
Sbjct: 183 ITLLTFLLKLWNDQIANYSKHEKMSTKVKMTRVIYTQTKEYVKPLF 228


>AY051956-1|AAK93380.1|  258|Drosophila melanogaster LD42595p
           protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 487 VQTLF*LIKHLLNFITNILLLVTLQNKH 404
           V  LF LI  L+NF+T++LL V L+ ++
Sbjct: 121 VFALFSLIMALINFVTSVLLCVALRKEY 148


>AF170829-4|AAD49741.1|  340|Drosophila melanogaster putative mRNA
           splicing factor protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 445 ITNILLLVTLQNKHIPNYT*SKLVTFQYTMW-VQYFQTKAFVMPIF 311
           IT +  L+ L N  I NY+  + ++ +  M  V Y QTK +V P+F
Sbjct: 183 ITLLTFLLKLWNDQIANYSKHEKMSTKVKMTRVIYTQTKEYVKPLF 228


>AE014297-2617|AAF55627.1|  340|Drosophila melanogaster CG6011-PA
           protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 445 ITNILLLVTLQNKHIPNYT*SKLVTFQYTMW-VQYFQTKAFVMPIF 311
           IT +  L+ L N  I NY+  + ++ +  M  V Y QTK +V P+F
Sbjct: 183 ITLLTFLLKLWNDQIANYSKHEKMSTKVKMTRVIYTQTKEYVKPLF 228


>AE014297-908|AAN13416.1|  258|Drosophila melanogaster CG8121-PC,
           isoform C protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 487 VQTLF*LIKHLLNFITNILLLVTLQNKH 404
           V  LF LI  L+NF+T++LL V L+ ++
Sbjct: 121 VFALFSLIMALINFVTSVLLCVALRKEY 148


>AE014297-907|AAN13415.1|  258|Drosophila melanogaster CG8121-PB,
           isoform B protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 487 VQTLF*LIKHLLNFITNILLLVTLQNKH 404
           V  LF LI  L+NF+T++LL V L+ ++
Sbjct: 121 VFALFSLIMALINFVTSVLLCVALRKEY 148


>AE014297-906|AAF54359.1|  258|Drosophila melanogaster CG8121-PA,
           isoform A protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 487 VQTLF*LIKHLLNFITNILLLVTLQNKH 404
           V  LF LI  L+NF+T++LL V L+ ++
Sbjct: 121 VFALFSLIMALINFVTSVLLCVALRKEY 148


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,207,253
Number of Sequences: 53049
Number of extensions: 559843
Number of successful extensions: 1779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)