Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40489
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    26   0.35 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   4.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   4.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   4.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   4.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   4.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 688 KNSF*ITLIDLKYVTNFVKKK 626
           K +F IT+ DL ++TN  KKK
Sbjct: 379 KRNFFITMFDLDFLTNACKKK 399


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 635 KEKKIVWNFNSLKLNLQNILYSQLQYTHLKLYTLKVECKNSVPI 504
           KE KI+ + ++  ++  N  Y +LQY ++  Y  ++     VP+
Sbjct: 77  KEPKIISSLSNKTIHNNNNNYKKLQYYNIN-YIEQIPVPVPVPV 119


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 635 KEKKIVWNFNSLKLNLQNILYSQLQYTHLKLYTLKVECKNSVPI 504
           KE KI+ + ++  ++  N  Y +LQY ++  Y  ++     VP+
Sbjct: 77  KEPKIISSLSNKTIHNNNNNYKKLQYYNIN-YIEQIPVPVPVPV 119


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 635 KEKKIVWNFNSLKLNLQNILYSQLQYTHLK-LYTLKVECKNSVPIF 501
           KE KI+ + ++  ++  N  Y +LQY ++  +  + V     VP++
Sbjct: 77  KEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPIPVPVY 122


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 635 KEKKIVWNFNSLKLNLQNILYSQLQYTHLKLYTLKVECKNSVPI 504
           KE KI+ + ++  ++  N  Y +LQY ++  Y  ++     VP+
Sbjct: 77  KEPKIISSLSNKTIHNNNNNYKKLQYYNIN-YIEQIPVPVPVPV 119


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 635 KEKKIVWNFNSLKLNLQNILYSQLQYTHLKLYTLKVECKNSVPI 504
           KE KI+ + ++  ++  N  Y +LQY ++  Y  ++     VP+
Sbjct: 310 KEPKIISSLSNKTIHNNNNNYKKLQYYNIN-YIEQIPVPVPVPV 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,430
Number of Sequences: 438
Number of extensions: 4466
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)