Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40488
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    28   1.6  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   2.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.9  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.5  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 356 QKYYFNKSANQLQMKIRTFGSG 291
           Q +YF+K  N  Q++I+ FG+G
Sbjct: 316 QDFYFSKGYNSYQIEIQMFGNG 337


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 528 YKKTVLFIS*LYRKAVLGFIECGICID 608
           Y +   F+S L   A++GFI CGI ID
Sbjct: 217 YGEVEFFVSSLKVMAMVGFIICGIVID 243


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 137  ICLNRNDIKYILDNSVFP*TANFSHIHSMRY*FFKM 30
            +C  RN +KY+LD+     T  FS I S+R  F  +
Sbjct: 951  VCFVRNSLKYLLDDFTKVITKTFS-IKSIRLQFLSL 985


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 449  SCTILYLHMSTVLYS*ICIQFIPANLT 369
            S + L LH+STVLY    +QF+ +++T
Sbjct: 1192 SFSSLPLHISTVLYQKQLLQFMASDIT 1218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,561
Number of Sequences: 5004
Number of extensions: 52044
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)