Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40487
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.25 
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   7.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 45  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 155
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 272 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 382
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 283 NCVRSFYFQRMVFPVRVFTKICMPPRRR 200
           N +R   F  + F V  ++K+C+  RR+
Sbjct: 36  NILRGMQFTDITFGVNKWSKVCIVVRRK 63


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 541  FVLDLRLHILNVSEASTSKVMVFS 470
            +V+D+R+H+   SE+ T   + +S
Sbjct: 1191 YVVDVRVHVPGESESETVLTLAWS 1214


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 337 LLIRRNSFFVLDLRLHILNC 278
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 110 LLIRRNSFFVLDLRLHVLNC 51
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,305
Number of Sequences: 438
Number of extensions: 5073
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)