Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40486
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    28   1.7  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   5.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   5.2  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   9.0  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 607 GGRAHSPTGVKWLLEPIDIY---KLNAQ 533
           GG  H P  V WLL P DIY   K+N Q
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRKVNVQ 261


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 120 SNETSERMSKLQTKMNISLFRHP---SMFFGIKISSLHN 13
           +NE+S    KL  +  + +F HP   SMFFG  I  L N
Sbjct: 19  ANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGN 57


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 434 GVVVPTRADSQEVLTPVNIYVSSTSK--LTHRHSPLSFSPNLLSGSRFRSGGRFCEAL 267
           G + P    S +  +P N+Y++   +  +TH H   S   N  +G     G +FC+ L
Sbjct: 226 GTLSPETPSSSD--SPSNLYLNYPKRKSITHLHHDCSALSNGENGEDVADGKQFCQKL 281


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 689  KTNIIAIYLFRVTGAFMPI---FAYFCCLGGWTSSQSY 585
            + +I  I +FR+ G F+     FA+F    GW S QS+
Sbjct: 1028 REDIRPIAMFRLRGEFLLCYSDFAFFVNTNGWKSRQSW 1065


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 407 SQEVLTPVNIYVSSTSKLTHRHSPLSFSPNLLSGSRFRS 291
           SQ  LTP++    ST+ L+   SPL+F     S  R RS
Sbjct: 6   SQRPLTPLSQAFLSTNTLSPASSPLTFHSEAASLRRKRS 44


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 575 VVTGAHRHL*VKCATDLEI*F*VSSIVTTAATPFKPKRI 459
           +V G H     KC  DL+    +  IV T   P KP+ +
Sbjct: 335 IVIGTHGIFQNKCLKDLQSCEYIEQIVVTNTYPIKPQAV 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,641
Number of Sequences: 5004
Number of extensions: 63604
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)