Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40486
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     30   1.8  
08_02_0553 - 18561912-18563042                                         30   2.3  
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612...    29   5.4  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    28   9.4  
05_04_0328 - 20303330-20303440,20304123-20304942,20305170-203053...    28   9.4  

>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 125 AAQQRRNVFFFSLPMLIALRGYFSFSLTCR*AHGAQTGCFANTA 256
           A ++ + +     PML    GY +  L C    G QT CF +TA
Sbjct: 711 AEEEDKKLQLLFCPMLNRCHGYKTLKLMCETELGIQTQCFLSTA 754


>08_02_0553 - 18561912-18563042
          Length = 376

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 272 LRRIYHRIGNATHSEDSARNSVGCVYELIYSSRIRKCLLVLG 397
           LR + HR+   T +   AR SV C + L YSS  R C+ V+G
Sbjct: 286 LRSVEHRV-LPTGAAGPARVSVACFFRLAYSS-TRPCVPVVG 325


>03_02_0171 +
           6126685-6127107,6127237-6127581,6127701-6127997,
           6129763-6129990,6130716-6131036
          Length = 537

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 165 GREKKKTFRLCCAAYSNETSERMSKLQTKMNISLFRHPSM 46
           GREK+K   +C   +S   + +    Q   NISL RH  M
Sbjct: 496 GREKEKHVLICRVKHSPSVAAKRQPFQEIGNISLPRHAPM 535


>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
            7921808-7922407
          Length = 1071

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 27   KF*FQKTLMGDEIRICSSSFVILTCVLRSHW 119
            KF FQ  L+ D + +CSS  V   C++ + W
Sbjct: 957  KFVFQSFLIADTLAMCSSLVVAFICII-ARW 986


>05_04_0328 -
           20303330-20303440,20304123-20304942,20305170-20305368,
           20305417-20305954
          Length = 555

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 542 KCAT-DLEI*F*VSSIVTTAATPFKPKRIFCFTAEIGGVVVPTRADSQEVLTPVNIYVSS 366
           KC++ D+E  F V+ +VT + T    K +       G  ++  R  S+E  T   ++ S 
Sbjct: 58  KCSSLDVEPDFTVAVVVTCSNTAVDSKELVATDGATGTTIIDPRVCSKETHTKCLLFGSD 117

Query: 365 TSKLTHR 345
            + +T R
Sbjct: 118 VNGVTDR 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,856,697
Number of Sequences: 37544
Number of extensions: 398803
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)