Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40486
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 276 AESTTGSETRPTQKIRRETQ 335
           A  TTG+ T PT+++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 109  GLIGIGGTAEAKRLFLFP 162
            GL G+GG AEA    L P
Sbjct: 1715 GLGGLGGAAEASAAGLHP 1732


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 109  GLIGIGGTAEAKRLFLFP 162
            GL G+GG AEA    L P
Sbjct: 1711 GLGGLGGAAEASAAGLHP 1728


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 146 VFFFSLPMLIALRGYFSFSLTCR 214
           + FF +PMLI L  Y    L  R
Sbjct: 218 IIFFLIPMLIILVVYTRMGLKIR 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,581
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)