Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40484
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    31   0.22 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    29   0.68 
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    27   2.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.3  

>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 445 PLHDEVRHNLKNLFR*MCNGNLFCISTSCMNSVLMRFP 558
           PL DE R +  ++ +    GN F +STS +++V +  P
Sbjct: 121 PLFDEYRQHFSSIEKKPAEGNAFIVSTSFLSNVFLEQP 158


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 565 VYFIKAYHGMKSVFRFLFIR-FKVNGSVY 648
           ++F+K YH    VFR  FIR F++ G  Y
Sbjct: 187 LFFLKQYHNFMFVFRDYFIRDFELGGGPY 215


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = -2

Query: 337 TMIAIHRDYYSIDNRTRQCIYFLRLKSLTKPVYICEYFL*TKHYPLYVAILFWKMSTCIF 158
           T+I   +D  ++ N+ +   +F  L+  +       YF    H  +  + LF K +T   
Sbjct: 8   TLITDFQDVKTLKNKRKCFSFFFELRLFSPQCLFIVYFFYLLHVRINTSPLFIKTTTRPT 67

Query: 157 MIFMITNYKRTI 122
            +  IT Y   +
Sbjct: 68  ALIHITKYSEAL 79


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 548 INTLFMHEVEIQNKLPLHIYRKRF 477
           I+TLF+    I N +  H+Y+K++
Sbjct: 867 IDTLFLESWSILNHILFHVYKKKY 890


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 529  CMNSVLMRFP*FVYFIKAYHG 591
            C+  ++ R+P  VY I  YHG
Sbjct: 1258 CIAGIIRRYPIDVYHINDYHG 1278


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 511  FCISTSCMNSVLMRFP*FVYFIKAYHG 591
            + +   C+  V  RFP  +Y +  YHG
Sbjct: 1285 YSVWNQCIAEVWKRFPLDIYHVNDYHG 1311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,098
Number of Sequences: 5004
Number of extensions: 62191
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)