Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40484
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1275 - 25792148-25792227,25792457-25792488,25792590-257926...    29   5.0  
08_01_0471 - 4147170-4149207,4150535-4150692                           28   6.6  

>08_02_1275 -
           25792148-25792227,25792457-25792488,25792590-25792651,
           25792721-25792801,25793086-25793241,25793292-25793348,
           25793349-25793510,25793586-25793648,25793742-25793804,
           25793895-25793948,25794334-25794390,25794479-25794547,
           25795053-25795166,25795245-25795316,25795406-25795527,
           25796416-25796617
          Length = 481

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 418 TLATQDERAIHV*--FMATAALRSRQSDFTMIA-IHRDYYSIDNRTRQCIYFLRLKSLTK 248
           TL    +RA+ V   F+ +A    RQ+  T++  +H+   S    T++ ++FL    L  
Sbjct: 372 TLKPYTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLASALLAI 431

Query: 247 PVYI 236
           PVYI
Sbjct: 432 PVYI 435


>08_01_0471 - 4147170-4149207,4150535-4150692
          Length = 731

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 635 FTLNLINKKRKTDFIP**AFMK*TNHGNRINTLFMHEVEIQNKLP 501
           F   L+N+K K D I   +F    +  N +N+ F H + + N+ P
Sbjct: 331 FVQRLLNEKDKYDSIVTTSFSNDKSFQNALNSSFEHFINLNNRCP 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,586
Number of Sequences: 37544
Number of extensions: 331585
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)