Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40483
(602 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 152 1e-36
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 152 1e-36
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 152 1e-36
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 152 1e-36
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 140 3e-33
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 87 4e-17
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 4.1
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 4.1
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 4.1
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 4.1
BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein. 29 9.5
BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein. 29 9.5
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 29 9.5
AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein. 29 9.5
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 152 bits (368), Expect = 1e-36
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = +3
Query: 3 PIRKKRKYEFGRPTENTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 182
P KKRKYE GRP NT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRII
Sbjct: 20 PYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRII 79
Query: 183 DVVYNASNNELVRTKTLVKNAIVV 254
DVVYNASNNELVRTKTLVKN IV+
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVL 103
Score = 140 bits (340), Expect = 3e-33
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = +2
Query: 236 QECNCCIDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 415
+ C ID+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
Query: 416 VEGALEEQFHTGRLLACVASRPGQCGRADGY 508
+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 158 ISSLLEEQFQQGKLLACIASRPGQCGRADGY 188
Score = 36.7 bits (81), Expect = 0.063
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 508 LLEGKELEFYLRKIKSKRAK 567
+LEGKELEFYLRKIK+++ K
Sbjct: 189 VLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 152 bits (368), Expect = 1e-36
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = +3
Query: 3 PIRKKRKYEFGRPTENTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 182
P KKRKYE GRP NT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRII
Sbjct: 20 PYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRII 79
Query: 183 DVVYNASNNELVRTKTLVKNAIVV 254
DVVYNASNNELVRTKTLVKN IV+
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVL 103
Score = 140 bits (340), Expect = 3e-33
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = +2
Query: 236 QECNCCIDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 415
+ C ID+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
Query: 416 VEGALEEQFHTGRLLACVASRPGQCGRADGY 508
+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 158 ISSLLEEQFQQGKLLACIASRPGQCGRADGY 188
Score = 36.7 bits (81), Expect = 0.063
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 508 LLEGKELEFYLRKIKSKRAK 567
+LEGKELEFYLRKIK+++ K
Sbjct: 189 VLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 152 bits (368), Expect = 1e-36
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = +3
Query: 3 PIRKKRKYEFGRPTENTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 182
P KKRKYE GRP NT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRII
Sbjct: 20 PYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRII 79
Query: 183 DVVYNASNNELVRTKTLVKNAIVV 254
DVVYNASNNELVRTKTLVKN IV+
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVL 103
Score = 140 bits (340), Expect = 3e-33
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = +2
Query: 236 QECNCCIDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 415
+ C ID+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
Query: 416 VEGALEEQFHTGRLLACVASRPGQCGRADGY 508
+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 158 ISSLLEEQFQQGKLLACIASRPGQCGRADGY 188
Score = 36.7 bits (81), Expect = 0.063
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 508 LLEGKELEFYLRKIKSKRAK 567
+LEGKELEFYLRKIK+++ K
Sbjct: 189 VLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 152 bits (368), Expect = 1e-36
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = +3
Query: 3 PIRKKRKYEFGRPTENTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 182
P KKRKYE GRP NT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRII
Sbjct: 20 PYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRII 79
Query: 183 DVVYNASNNELVRTKTLVKNAIVV 254
DVVYNASNNELVRTKTLVKN IV+
Sbjct: 80 DVVYNASNNELVRTKTLVKNCIVL 103
Score = 140 bits (340), Expect = 3e-33
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = +2
Query: 236 QECNCCIDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 415
+ C ID+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
Query: 416 VEGALEEQFHTGRLLACVASRPGQCGRADGY 508
+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 158 ISSLLEEQFQQGKLLACIASRPGQCGRADGY 188
Score = 36.7 bits (81), Expect = 0.063
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 508 LLEGKELEFYLRKIKSKRAK 567
+LEGKELEFYLRKIK+++ K
Sbjct: 189 VLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 140 bits (340), Expect = 3e-33
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = +2
Query: 236 QECNCCIDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 415
+ C ID+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 78 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 137
Query: 416 VEGALEEQFHTGRLLACVASRPGQCGRADGY 508
+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 138 ISSLLEEQFQQGKLLACIASRPGQCGRADGY 168
Score = 91.9 bits (218), Expect = 2e-18
Identities = 52/84 (61%), Positives = 57/84 (67%)
Frame = +3
Query: 3 PIRKKRKYEFGRPTENTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 182
P KKRKYE GRP NT++GP+RIH+VR RGG C TRKTRII
Sbjct: 20 PYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRKTRII 59
Query: 183 DVVYNASNNELVRTKTLVKNAIVV 254
DVVYNASNNELVRTKTLVKN IV+
Sbjct: 60 DVVYNASNNELVRTKTLVKNCIVL 83
Score = 36.7 bits (81), Expect = 0.063
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 508 LLEGKELEFYLRKIKSKRAK 567
+LEGKELEFYLRKIK+++ K
Sbjct: 169 VLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 87.0 bits (206), Expect = 4e-17
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +2
Query: 329 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 508
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Score = 36.7 bits (81), Expect = 0.063
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 508 LLEGKELEFYLRKIKSKRAK 567
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 308 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 454
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 308 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 454
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 308 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 454
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 4.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 308 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 454
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein.
Length = 446
Score = 29.5 bits (63), Expect = 9.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 477 RLATQASKRPVWNCSSRAPSTL 412
R A AS+RP+W+ S RAPS L
Sbjct: 329 RSAPAASERPLWDTSLRAPSCL 350
>BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein.
Length = 391
Score = 29.5 bits (63), Expect = 9.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 477 RLATQASKRPVWNCSSRAPSTL 412
R A AS+RP+W+ S RAPS L
Sbjct: 69 RSAPAASERPLWDTSLRAPSCL 90
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 175 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 77
R R E PQ+ + V RS R L PPR RT+
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQ 443
>AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein.
Length = 634
Score = 29.5 bits (63), Expect = 9.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 477 RLATQASKRPVWNCSSRAPSTL 412
R A AS+RP+W+ S RAPS L
Sbjct: 506 RSAPAASERPLWDTSLRAPSCL 527
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,392,628
Number of Sequences: 237096
Number of extensions: 1777463
Number of successful extensions: 4655
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4655
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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