Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40479
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    60   2e-09
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    58   6e-09
04_04_0387 + 24869594-24871480                                         31   1.1  
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   1.1  
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    30   1.9  
03_05_0161 + 21400580-21401695                                         30   1.9  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 33/62 (53%), Positives = 41/62 (66%)
 Frame = +2

Query: 23  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 202
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58

Query: 203 RL 208
           ++
Sbjct: 59  KI 60



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = +1

Query: 244 ESVEDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 423
           +++E+A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  A
Sbjct: 73  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132

Query: 424 A 426
           A
Sbjct: 133 A 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +2

Query: 26  PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 205
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 206 L 208
           +
Sbjct: 73  I 73



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 17/44 (38%), Positives = 31/44 (70%)
 Frame = +1

Query: 244 ESVEDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 375
           +++E+A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 244 ESVEDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 423
           E VE    +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ 
Sbjct: 493 EEVESDDESEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRM 548

Query: 424 ARAGTFGKK 450
           ARA T   K
Sbjct: 549 ARANTMVMK 557


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 506 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 327
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
            25457561-25457740,25457823-25458017,25459059-25459157,
            25459508-25460137,25460250-25460591
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 244  ESVEDAKLN-EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTA 396
            E ++DA++  ++ T+ + A  +  ++K+A   DY R KL AAR +   ARTA
Sbjct: 879  EKIQDAQICLDELTQKRDAINVLRQKKKALCDDY-REKLEAARQEERGARTA 929


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 186 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 91
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,932
Number of Sequences: 37544
Number of extensions: 346085
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)