Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40478
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.6  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 266 SQYVYNNIVHGKK---IIFSYHKQMEY 195
           + YVY  I++GKK   II   H+ ++Y
Sbjct: 38  TMYVYEEIINGKKLTEIINETHENVKY 64


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 196 YSIC--LW*EKIIFLP*TILLYTYW 264
           Y +C  +W   + F+P  +++Y+YW
Sbjct: 216 YLVCYGIW---VYFVPLFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 196 YSIC--LW*EKIIFLP*TILLYTYW 264
           Y +C  +W   + F+P  +++Y+YW
Sbjct: 92  YLVCYGIW---VYFVPLFLIIYSYW 113


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 199 SICLW*EKIIF 231
           S C+W EKI+F
Sbjct: 362 SQCIWQEKIVF 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,694
Number of Sequences: 438
Number of extensions: 3808
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)