Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40475
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   177   1e-46
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   175   4e-46
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   173   1e-45
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   173   1e-45
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.003
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  177 bits (430), Expect = 1e-46
 Identities = 83/84 (98%), Positives = 83/84 (98%)
 Frame = +2

Query: 2   KFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 181
           KFEKEAQEMGKGSFKYAWVLDKLKAERE GITIDIALWKFETSKYYVTIIDAPGHRDFIK
Sbjct: 41  KFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 100

Query: 182 NMITGTSQADCAVLIVAAGTGEFE 253
           NMITGTSQADCAVLIVAAGTGEFE
Sbjct: 101 NMITGTSQADCAVLIVAAGTGEFE 124



 Score =  175 bits (425), Expect = 4e-46
 Identities = 92/144 (63%), Positives = 103/144 (71%), Gaps = 2/144 (1%)
 Frame = +1

Query: 253 SGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 432
           +GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYN
Sbjct: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN 184

Query: 433 PAAVAFVPISGWHGDNMLEPSTKMPCSRDGRWSVKKAKLTENASLKLSMPSCHLP--APL 606
           PAAVAFVPISGWHGDNMLE S+KMP  +   W+V++ +        +      LP   P 
Sbjct: 185 PAAVAFVPISGWHGDNMLEVSSKMPWFKG--WTVERKEGKVEGKCLIEALDAILPPTRPT 242

Query: 607 TSPCVFPCKTYTKSVVLVPLPVGR 678
                 P +   K   +  +PVGR
Sbjct: 243 DKALRLPLQDVYKIGGIGTVPVGR 266


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  175 bits (425), Expect = 4e-46
 Identities = 92/144 (63%), Positives = 103/144 (71%), Gaps = 2/144 (1%)
 Frame = +1

Query: 253 SGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 432
           +GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYN
Sbjct: 68  AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN 127

Query: 433 PAAVAFVPISGWHGDNMLEPSTKMPCSRDGRWSVKKAKLTENASLKLSMPSCHLP--APL 606
           PAAVAFVPISGWHGDNMLE S+KMP  +   W+V++ +        +      LP   P 
Sbjct: 128 PAAVAFVPISGWHGDNMLEVSSKMPWFKG--WTVERKEGKVEGKCLIEALDAILPPTRPT 185

Query: 607 TSPCVFPCKTYTKSVVLVPLPVGR 678
                 P +   K   +  +PVGR
Sbjct: 186 DKALRLPLQDVYKIGGIGTVPVGR 209



 Score =  141 bits (342), Expect = 5e-36
 Identities = 66/67 (98%), Positives = 66/67 (98%)
 Frame = +2

Query: 53  WVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 232
           WVLDKLKAERE GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 233 AGTGEFE 253
           AGTGEFE
Sbjct: 61  AGTGEFE 67


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  173 bits (422), Expect = 1e-45
 Identities = 83/96 (86%), Positives = 89/96 (92%)
 Frame = +1

Query: 253 SGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 432
           +GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYN
Sbjct: 52  AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN 111

Query: 433 PAAVAFVPISGWHGDNMLEPSTKMPCSRDGRWSVKK 540
           PAAVAFVPISGWHGDNMLE S+KMP  +   W+V++
Sbjct: 112 PAAVAFVPISGWHGDNMLEVSSKMPWFKG--WTVER 145



 Score =  111 bits (267), Expect = 6e-27
 Identities = 51/51 (100%), Positives = 51/51 (100%)
 Frame = +2

Query: 101 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 253
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 51



 Score = 70.5 bits (165), Expect = 1e-14
 Identities = 30/34 (88%), Positives = 31/34 (91%)
 Frame = +3

Query: 510 FKGWQVERKEGKADGKCLIEALDAILPPARPTDK 611
           FKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 138 FKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  173 bits (421), Expect = 1e-45
 Identities = 81/84 (96%), Positives = 82/84 (97%)
 Frame = +2

Query: 2   KFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 181
           KFEKEAQEMGKGSFKYAWVLDKLKAERE GITIDIALWKFET+KYYVTIIDAPGHRDFIK
Sbjct: 41  KFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIK 100

Query: 182 NMITGTSQADCAVLIVAAGTGEFE 253
           NMITGTSQADCAVLIVAAG GEFE
Sbjct: 101 NMITGTSQADCAVLIVAAGIGEFE 124



 Score =  167 bits (407), Expect = 6e-44
 Identities = 88/144 (61%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
 Frame = +1

Query: 253 SGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 432
           +GISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKKIGYN
Sbjct: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184

Query: 433 PAAVAFVPISGWHGDNMLEPSTKMPCSRDGRWSVKKAKLTENASLKLSMPSCHLP--APL 606
            A+VAFVPISGWHGDNMLEPS K P  +   W V++     +    +      LP   P 
Sbjct: 185 TASVAFVPISGWHGDNMLEPSPKTPWYKG--WKVERKDGNADGKTLIEALDAILPPSRPT 242

Query: 607 TSPCVFPCKTYTKSVVLVPLPVGR 678
                 P +   K   +  +PVGR
Sbjct: 243 DKALRLPLQDVYKIGGIGTVPVGR 266


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 140 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 244
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 226
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 390 QEGSILIHQEDWLQPSCCRFRAHFWMARRQHVGAFNQNALFKGW 521
           +E  ++I   D ++    +F + +WM  R  +    QN + K W
Sbjct: 324 EEKRMVIILPDGIRNYLTKFVSEYWMETRGFLQPVCQNEMNKWW 367


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 226
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 501 FG*RLQHVVSVPSRNGHESDSSWV 430
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 344 WIPLNHHTVSPDLRKSRRKY 403
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,454
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)