Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40460
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.26 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 373 ILPIFSCLKSQSTTRNLQEGNITINFKC 290
           +L +F+C+  + T  +L   N+T++ KC
Sbjct: 608 LLDMFNCVVVEETIPSLNSTNVTLSTKC 635


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 416 PVNMPHR*LQYSSQ---YFTHFFLFKITIYYKK 327
           PVN  ++ L  ++Q   Y++H+  FK   Y KK
Sbjct: 445 PVNENYKSLNLAAQKREYYSHYVAFKSLSYLKK 477


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 469 NSCVPILNGVIVVNDSAFM 525
           NSC  +L+G+++ +   FM
Sbjct: 322 NSCTSMLSGIVIFSVVGFM 340


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 469 NSCVPILNGVIVVNDSAFM 525
           NSC  +L+G+++ +   FM
Sbjct: 375 NSCTSMLSGIVIFSVVGFM 393


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 186 WCSVWCAAMDDLICHAT 236
           WCS+W  A+D  +C A+
Sbjct: 137 WCSIW-LAVDVWMCTAS 152


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 237 PWHGKLNRPLL 205
           PWHG LN  +L
Sbjct: 85  PWHGVLNATVL 95


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 237 PWHGKLNRPLL 205
           PWHG LN  +L
Sbjct: 85  PWHGVLNATVL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,690
Number of Sequences: 438
Number of extensions: 4074
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)