Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40456
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              42   7e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    38   1e-04
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    33   0.002
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            27   0.20 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.27 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 41.5 bits (93), Expect = 7e-06
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +1

Query: 31  QPAQFKTQITSKIKPTIQWLR-EGALIPETPD-FQMIHEGNNAVLLIGNTYEEDTGTFTC 204
           + A  +  +  +  P +QWL+ + AL  + PD + +I  GN   L+I N    DTG + C
Sbjct: 417 EEANIRCHVAGEPLPRVQWLKNDEALNHDQPDKYDLI--GNGTKLIIKNVDYADTGAYMC 474

Query: 205 RATTAAGQVETSAKLVVK 258
           +A++  G     + LVV+
Sbjct: 475 QASSIGGITRDISSLVVQ 492


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
 Frame = +1

Query: 76  TIQWLREG-ALIPETPDFQMIH----EGNNAVLLIGNTYEEDTGTFTCRATTAAGQVETS 240
           TI WL++G +  P  P+    +    +  +++L I N   E +G +TC A   A +V  +
Sbjct: 642 TISWLKDGQSPFPLPPNLASANISQLDPYSSLLSITNLAAEHSGDYTCVAANPAAEVRYT 701

Query: 241 AKLVVKVRHRY 273
           AKL VKV  R+
Sbjct: 702 AKLQVKVPPRW 712



 Score = 30.7 bits (66), Expect = 0.012
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = +1

Query: 1    PLRDIVVYEGQPAQFKTQITSKIKPTIQWLREGA--LIPETP-----DFQMIHEGNNAVL 159
            P R + V +G  A    ++      T+ WL+ G   L P T        ++  +G  A L
Sbjct: 813  PSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQL 872

Query: 160  LIGNTYEEDTGTFTCRATTAAGQVETSAKLVVK 258
             I +    D+G + C+A+   G+ +   +L+V+
Sbjct: 873  QISSAEASDSGAYFCQASNLYGRDQQLVQLLVQ 905



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 151 AVLLIGNTYEEDTGTFTCRATTAAGQVETSAKLVV 255
           +VL +     ED G + C A+   G+     +L+V
Sbjct: 293 SVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIV 327


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 76  TIQWLREGALIPETPDFQMIH-EGNNAVLLIGNTYEEDTGTFTCRATTAAGQVETSAKLV 252
           +I WL++G  +  +    + + +  N++L+I +   +  G ++C A   A +V  + +LV
Sbjct: 642 SISWLKDGRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCVARNLAAEVSHTQRLV 701

Query: 253 VKVRHRY 273
           V V  R+
Sbjct: 702 VHVPPRW 708



 Score = 30.7 bits (66), Expect = 0.012
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = +1

Query: 1    PLRDIVVYEGQPAQFKTQITSKIKPTIQWLREGA--LIPETP-----DFQMIHEGNNAVL 159
            P R + V +G  A    ++      T+ WL+ G   L P T        ++  +G  A L
Sbjct: 809  PSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQL 868

Query: 160  LIGNTYEEDTGTFTCRATTAAGQVETSAKLVVK 258
             I +    D+G + C+A+   G+ +   +L+V+
Sbjct: 869  QISSAEASDSGAYFCQASNLYGRDQQLVQLLVQ 901



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 151 AVLLIGNTYEEDTGTFTCRATTAAGQVETSAKLVV 255
           +VL +     ED G + C A+   G+     +L+V
Sbjct: 293 SVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIV 327


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +1

Query: 28  GQPAQFKTQITSKIKPTIQWLREGALIPETPDFQMIHE---GNNAV---LLIGNTYEEDT 189
           G+   F    T   +P I WL++G  +     FQ +HE   GN+ +   + I    ++D 
Sbjct: 37  GRKITFFCMATGFPRPEITWLKDGIELYHHKFFQ-VHEWPVGNDTLKSKMEIDPATQKDA 95

Query: 190 GTFTCRA 210
           G + C+A
Sbjct: 96  GYYECQA 102


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +1

Query: 28  GQPAQFKTQITSKIKPTIQWLREGALIPETPDFQMIHEGNNAVLLIGNTYEEDTGTFTCR 207
           G+PA F   +      T+ WL++G  +        + E   AVL I +  +ED G + C 
Sbjct: 322 GRPATFTCNVRGNPIKTVSWLKDGKPLG-------LEE---AVLRIESVKKEDKGMYQCF 371

Query: 208 ATTAAGQVETSAKL 249
                   + +A+L
Sbjct: 372 VRNDQESAQATAEL 385



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 151 AVLLIGNTYEEDTGTFTCRATTAAGQVETSAKLVVKVRHRY 273
           ++L+I        G + C A  AAG    S  L V V  R+
Sbjct: 641 SMLMISVITARHAGEYVCTAENAAGTASHSTTLTVNVPPRW 681


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 430 SGYRNNIRPFPKHTPTNAVRCDMTRKQINNL 522
           S Y  +    PKH PT+  +  M   ++++L
Sbjct: 370 STYSGSPTELPKHLPTSLTKSKMEVMELSDL 400


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 364 VTCWKVDRRV*GSIINSASNYRSGYRNN 447
           V+C  +DR     +I+S    R+ Y+++
Sbjct: 312 VSCLVIDRETFNQLISSLDEIRTRYKDS 339


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 53  CVLNWAGW 30
           CVL WA W
Sbjct: 145 CVLKWASW 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,679
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)