Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40455
         (281 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    22   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   1.4  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    19   7.7  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 139 TTEIKSIKMH 168
           TTE+KS++MH
Sbjct: 37  TTEVKSVEMH 46


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +2

Query: 134 NKRQRLNL---SKCM*IGASCFSSPIHYN*HVKY 226
           N + R+NL   S C+  GA+C     HY  H  Y
Sbjct: 57  NCQNRINLCDSSPCL-NGATCQDHTTHYTCHCPY 89


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 88  KNFYFQQNVTFSIY 47
           KN YFQ  ++ S+Y
Sbjct: 131 KNAYFQLVLSISVY 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,223
Number of Sequences: 336
Number of extensions: 1085
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4790565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)