Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40455
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   1.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   1.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   1.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.8  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   5.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    20   5.0  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           20   5.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 139 TTEIKSIKMH 168
           TTE+KS++MH
Sbjct: 286 TTEVKSVEMH 295


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 139 TTEIKSIKMH 168
           TTE+KS++MH
Sbjct: 229 TTEVKSVEMH 238


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 139 TTEIKSIKMH 168
           TTE+KS++MH
Sbjct: 286 TTEVKSVEMH 295


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -3

Query: 138 LLNVLLACVMYRSCEKKKTFIFNKT*HFQFIELVKLIISRN 16
           +LN  +  V+ +S E+  + + N + +   +++ KL+  RN
Sbjct: 486 ILNKTVLAVVRQSEEEAVSLLINFSKNNTIVDISKLVNKRN 526


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 171 ELEHHAFRHQFTTTDMLSIN*KV 239
           E E  A RH+  T D+LS   +V
Sbjct: 33  ENEERADRHRRVTCDLLSFKGQV 55


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 171 ELEHHAFRHQFTTTDMLSIN*KV 239
           E E  A RH+  T D+LS   +V
Sbjct: 33  ENEERADRHRRVTCDLLSFKGQV 55


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 171 ELEHHAFRHQFTTTDMLSIN*KV 239
           E E  A RH+  T D+LS   +V
Sbjct: 8   ENEERADRHRRVTCDLLSFKGQV 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,345
Number of Sequences: 438
Number of extensions: 1153
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)