Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40454
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 29 0.41
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 27 2.2
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 27 2.9
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 2.9
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 26 3.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 5.1
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 5.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 6.7
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 8.8
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 301 EGTDDAIPR--VGSDEPAFSDDEEETITPTIAEDTDDDDLPLS 423
+G D++P + D D+E P+I ED+DD+ L +S
Sbjct: 70 DGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDSDDERLMIS 112
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -3
Query: 244 FSYSGTQFSVQLLRVKQRMQI--WQNPFLNYLLKGIEYSLS-NFLCIWW 107
+ Y QF + K+ + + WQN Y KG YSLS + + I+W
Sbjct: 384 YQYIAEQFLKDSRKKKRNIDVLQWQNKGNTYHAKGKHYSLSFSIINIFW 432
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 352 SDDEEETITPTIAEDTDDDDL 414
+DD EET+T A D D+D++
Sbjct: 254 TDDNEETLTNLQANDVDEDEV 274
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 44 SHPAVTAT-LLDFLC-RIIPNFYPPYAEKVRQGIFN 145
SHP +A L DF+ R++ F P Y++ G+F+
Sbjct: 808 SHPYKSALDLYDFMAHRVVITFEPRYSDDTNNGVFD 843
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 72 NNVAVTAGCDLIEWCITR 19
NN++++AGCD+ + +TR
Sbjct: 75 NNISLSAGCDIFQRFVTR 92
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 304 GTDDAIPRVGSDEPAFSDDEEETITPTIAEDTDDDD 411
G DD +P VG D +E I E +D+D
Sbjct: 1350 GKDDTVPEVGQALKPLEDIDEAPIEGRAQEALEDED 1385
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 190 MQIWQNPFLNYLLKGIEYSLSNFLCI 113
+ I FL+ KG ++ L+NFLC+
Sbjct: 298 LSIRHGTFLSKRAKGWQFQLNNFLCV 323
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -3
Query: 229 TQFSVQLLRVKQRMQIWQNPFLNYLLKGIEYSLSNFL 119
T+F + LR+K R + + L+YL++ + +L N++
Sbjct: 320 TEFWTEELRLKFRFEFEKLVLLDYLMRNTDRNLDNWM 356
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 328 VGSDEPAFSDDEEETITPTIAEDTDDDDLPLS 423
VGSD P +E + P ++ D DD LS
Sbjct: 239 VGSDAPIIDVEESIAMKPLMSHDQVDDTASLS 270
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 11 PAILVMHHSMRSHPAVTATLLDFLCRI--IPNFYPPYAEKVRQGIFNSLQQIIEKR 172
PAILV + + P ++ +L+FLC + +P+ + + + IF + I+ R
Sbjct: 828 PAILVTLSRLITKPDLSVHILEFLCSLARLPDLIANFTDADYRQIFAIALKYIQHR 883
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = +1
Query: 292 IRDEGTDDAIPRVGSDEPAFS------DDEEETITPTIAEDTD 402
++ G D IPR D+PAF D++EE T A D +
Sbjct: 607 LKTSGHDITIPRSMRDDPAFQNPHGSLDNKEEEAAVTTAPDEE 649
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,411
Number of Sequences: 5004
Number of extensions: 51414
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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