Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40447
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 96 1e-20
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 96 1e-20
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 77 7e-15
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 58 3e-09
02_01_0273 + 1822370-1822503,1822913-1823258,1823393-1823635,182... 29 1.8
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 29 2.3
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.1
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 5.4
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 27 7.2
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 7.2
03_05_0796 + 27787401-27788831 27 7.2
07_01_0582 + 4331144-4331287,4331603-4331788 27 9.5
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 95.9 bits (228), Expect = 1e-20
Identities = 47/67 (70%), Positives = 52/67 (77%)
Frame = +3
Query: 237 YAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 416
Y P +K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 417 LRSQENE 437
LRSQE+E
Sbjct: 127 LRSQEDE 133
Score = 54.0 bits (124), Expect = 5e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 38 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 172
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 172 QRFKGQYLMPNIGYGSNKKTRHMLPNGF 255
++FKG LMPNIGYGS+KKTRH LPN F
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLPNKF 72
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 95.9 bits (228), Expect = 1e-20
Identities = 47/67 (70%), Positives = 52/67 (77%)
Frame = +3
Query: 237 YAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 416
Y P +K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 417 LRSQENE 437
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 172 QRFKGQYLMPNIGYGSNKKTRHMLPNGF 255
++FKG LMPNIGYGS+KKTRH LPN F
Sbjct: 112 RKFKGCTLMPNIGYGSDKKTRHYLPNKF 139
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 38 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 130
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 134 NWRKPRGIDNRVR 172
+WR+P+GID+RVR
Sbjct: 99 SWRRPKGIDSRVR 111
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 77.0 bits (181), Expect = 7e-15
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +3
Query: 237 YAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 401
Y P +K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
Score = 54.0 bits (124), Expect = 5e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 38 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 172
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 172 QRFKGQYLMPNIGYGSNKKTRHMLPNGF 255
++FKG LMPNIGYGS+KKTRH LPN F
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLPNKF 72
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +2
Query: 26 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 172
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 366
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 172 QRFKGQYLMPNIGYGSNKKTRHMLPNGF 255
++FKG LMPNIGYGS+KKTRH LPN F
Sbjct: 367 RKFKGCTLMPNIGYGSDKKTRHYLPNKF 394
Score = 36.3 bits (80), Expect = 0.012
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 237 YAPKWIRKVLVHNVKELEILMMQNR 311
Y P +K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>02_01_0273 +
1822370-1822503,1822913-1823258,1823393-1823635,
1824212-1824268,1824407-1824487,1824725-1824786,
1824990-1826004
Length = 645
Score = 29.1 bits (62), Expect = 1.8
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = +3
Query: 93 LSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPKWIRKVLVH 272
L G NR+A +L LE L A+Q SI H + DPS+A KW R VL
Sbjct: 459 LHGANRLASNSL------LEALVFARRAVQPSI---DHMVD-ADVDPSFAKKWARPVLSV 508
Query: 273 NVKE 284
++++
Sbjct: 509 SLRD 512
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 261 PY--ESIWEHMTGLLVGTVTDVGHQVLTLESL 172
PY SIW +GLL+ TD GH VL+ SL
Sbjct: 120 PYAVSSIWPLPSGLLLQKSTDGGHMVLSSTSL 151
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 377 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 294
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 329 RSRCLFEEAEADRGKSPAAQHQSDECGRSPPVP 427
RS ++A+RG SPAA H D SP P
Sbjct: 40 RSSTSRRHSDANRGNSPAAPHSLDIYISSPAAP 72
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 260 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEAD-RGKSPAAQHQSDE 403
GP S G LD K V RRD +R L +A + AA SDE
Sbjct: 35 GPGSFADEHGELDQEKFAVSRRDAARRLIAAVDATLLARRAAAGEGSDE 83
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 428 LGPEASGRIRHSDAELLGSFHDQL 357
L PE S R +S A+LL FH QL
Sbjct: 30 LNPETSARAANSFAKLLARFHVQL 53
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 350 EAEADRGKSPAAQHQSDECGR 412
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>07_01_0582 + 4331144-4331287,4331603-4331788
Length = 109
Score = 26.6 bits (56), Expect = 9.5
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +3
Query: 90 DLSGINRIAMTNLRGIGVNLE---VLTTESAAIQGSILDAQHRLRFQQEDPSYAPKWIRK 260
+ SG N + ++ + + V+ E V ++ S G + + HR +F + PK +
Sbjct: 4 NFSGFNGVVLSVIGDVPVDSEAPVVTSSISPEFAGQVFEDAHRGKFSYAKFNIVPKTSSQ 63
Query: 261 VLVHNVKELEILMMQN 308
H E M+QN
Sbjct: 64 PYKHKKSRYEGQMVQN 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,933,210
Number of Sequences: 37544
Number of extensions: 233678
Number of successful extensions: 892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -