Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40444
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          27   0.21 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      27   0.21 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 440 IFSCEVAHHI*YALWVQLIDYLDSFKINQHP 348
           IFS  +     Y ++ ++IDY  S+K++Q P
Sbjct: 408 IFSTSMKDPAFYRIYKRIIDYYHSYKMHQKP 438


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 440 IFSCEVAHHI*YALWVQLIDYLDSFKINQHP 348
           IFS  +     Y ++ ++IDY  S+K++Q P
Sbjct: 408 IFSTSMKDPAFYRIYKRIIDYYHSYKMHQKP 438


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 528 LIKSTRIYGQHCKRIFMKWLQV*GFKLFASPN 623
           LI S  + G   K  F KWLQV    L  SPN
Sbjct: 636 LIPSHIMAGLLDKFFFPKWLQVLALWLNHSPN 667


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 225 SSTPIINTNMSFFYFMKGKMNRDSYSQNHNGQNRRL 118
           S+  I N N   + +     N ++Y+ N+N   ++L
Sbjct: 319 SNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,427
Number of Sequences: 438
Number of extensions: 4164
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)