Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40443
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.2  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  ERSSQLS*VQSFPNNPNHNSTQY 25
           ERS +   + S  NN N+N+  Y
Sbjct: 307 ERSKERKIISSLSNNYNYNNNNY 329


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 144 LWNLLPLYPPPQVSELVERSSQLS 73
           +W+  P+Y    + E++ + S++S
Sbjct: 312 IWSNFPIYKYKYIREIMNKESRIS 335


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 144 LWNLLPLYPPPQVSELVERSSQLS 73
           +W+  P+Y    + E++ + S++S
Sbjct: 312 IWSNFPIYKYKYIREIMNKESRIS 335


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +2

Query: 593 ITM-EIKSDENIFCNKY 640
           ITM ++KS  +I+C KY
Sbjct: 150 ITMYDLKSHNDIYCEKY 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,841
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)