Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40442
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   3.6  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   4.8  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    26   4.8  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   8.4  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   8.4  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 370 VSSRCSSLLAVPHFEAILKMIVTK-PSTFLFSSTAVGTLSYYNK 242
           V + C+SL AV   E+++     K P+T+  +S+A G L+Y N+
Sbjct: 421 VVALCNSLNAVGIAESVMDPFGGKLPTTYEETSSATGLLAYPNE 464


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 333 CGTASSEEQRLLTYQWLEYISMFSNQAVAN--STFAFKFLQEIGR 461
           C  + +E+   L    ++ +  F N  VAN  S  AFKFL  IGR
Sbjct: 344 CWISDTEDANFL----IDKVPQFDNVFVANGDSGHAFKFLPNIGR 384


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 84  EIVYSSKLQK*LSYY-FALTHSLEPDYFYAANEY 182
           E+++S  +++  ++Y F L      D+FY  NEY
Sbjct: 46  EVLFSGLIKQMANFYIFPLLLEARSDHFYEGNEY 79


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 461 SSTK*HISDWPVSNNCDV 514
           SSTK  I D P +N+CDV
Sbjct: 714 SSTKQKIFDQPTTNDCDV 731


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 75   VVLEIVYSSKLQK*LSYYFALTHSLEPDYFYAANEYQ*CGCN 200
            VV   + +S     +S YF +T  L PD  Y  N    C CN
Sbjct: 996  VVHRHIVNSVCDNAVSQYFLVTPKLLPDLTYHRNLKVLCICN 1037


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 364 SRCSSLLAVPHFEAILKMIVTKPS 293
           S C+  +AVP F   +K++  KPS
Sbjct: 174 SGCNDGMAVPFFYFAIKLLTVKPS 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,656
Number of Sequences: 5004
Number of extensions: 48603
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)