Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40439
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   0.93 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.8  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   6.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.6  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    21   6.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   6.6  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 32  TKIIERNSKIPCKQSQTFTTYSDNQPAVTIQVYEGERAMTKDNNLLGTF 178
           T +   + K+P     TF    DN+ +VTI+         K+ NL G F
Sbjct: 305 TVVFLDDMKVPYMYEDTFWIGYDNEQSVTIKT-----EYAKEKNLAGVF 348


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 273 GEQHRPQQEHRDQE 314
           G+QH PQ + R+Q+
Sbjct: 23  GQQHGPQSDSRNQQ 36


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 135 PSYTWMVTAGWLSEY 91
           P Y WM    W+S +
Sbjct: 131 PRYPWMSITDWMSPF 145


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 135 PSYTWMVTAGWLSEY 91
           P Y WM    W+S +
Sbjct: 190 PRYPWMSITDWMSPF 204


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 135 PSYTWMVTAGWLSEY 91
           P Y WM    W+S +
Sbjct: 131 PRYPWMSITDWMSPF 145


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 135 PSYTWMVTAGWLSEY 91
           P Y WM    W+S +
Sbjct: 190 PRYPWMSITDWMSPF 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,565
Number of Sequences: 336
Number of extensions: 2074
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)