Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40439
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.8  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/71 (21%), Positives = 29/71 (40%)
 Frame = +3

Query: 111  PSPSRCXXXXXXXXXXXXFWARST*RGSRPRREECPRST*RSTWTLTAPERVGQGEQHRP 290
            PSP               ++A S  RG + ++        +        ++  Q +Q + 
Sbjct: 1171 PSPFMAGAPNVPTILPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQ 1230

Query: 291  QQEHRDQERQG 323
            QQ+H+ +ER+G
Sbjct: 1231 QQQHQAREREG 1241


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 173 TFDLTGIPP 199
           TFD TGIPP
Sbjct: 138 TFDQTGIPP 146


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 270 QGEQHRPQQEHRDQERQGSS 329
           Q +Q + QQ+ +DQ++Q  S
Sbjct: 89  QQQQQQQQQQQQDQQQQQQS 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,774
Number of Sequences: 438
Number of extensions: 2780
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)