Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40438
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.46 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.60 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.60 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 319 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 498
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 499 YRY--LQKWPQE 528
           + Y  + KW Q+
Sbjct: 500 FDYSEVSKWVQK 511


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 613 CVGCIFALLISKASWYAFCESSTTECL 533
           C  CI   + S   W  +C S+   C+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCI 61


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 613 CVGCIFALLISKASWYAFCESSTTECL 533
           C  CI   + S   W  +C S+   C+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCI 509


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 361 KEYRVKVEKELREICYDV 414
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 361 KEYRVKVEKELREICYDV 414
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,367
Number of Sequences: 438
Number of extensions: 3528
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)