Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40437
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              26   0.35 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.35 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.9  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 189 EELLCYFNGNLKKFSVPLKTLGLTFKSLLQ 278
           E+L CYFN  L+KF+V  K  G    +LL+
Sbjct: 66  EKLKCYFNCVLEKFNVMDKKNGKIRYNLLK 95


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 541 IFITMFRPHFSAVSTEGKDVQCQ*AEFLAGL*KSSLVSLAT 419
           IF+ +F P F++ + EG D Q      L  +  S +++ AT
Sbjct: 218 IFLWLFWPSFNSAALEGDDQQRAIINTLLSISASCVIAFAT 258


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 384 FLAITCAEWISIVARETRDDFYKPAKN 464
           FLAI    W + ++R  R ++Y    N
Sbjct: 435 FLAINVFYWFAYLSRSERINYYNVNSN 461


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 224 EILCTAENSWSDFQKFASNTANVNP 298
           E +CTAEN+        + T NV P
Sbjct: 655 EYVCTAENAAGTASHSTTLTVNVPP 679


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 132 KELSCRFVHEENKILNTLKEELLCYFNGNLKKFSVPLKTLGLTFK 266
           ++ SC   +  +++ N L+ E    +    K+ SVP   L  T K
Sbjct: 371 RQNSCNIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLTTEK 415


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 366 EYLTFAFLAITCAEWISI 419
           +YL F  + +T + WI++
Sbjct: 314 KYLLFTMILVTLSIWITV 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,989
Number of Sequences: 438
Number of extensions: 3299
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)