Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40435
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 154 5e-39
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 154 5e-39
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 47 9e-07
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 1.8
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 26 1.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 2.4
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 3.1
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 5.5
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 24 9.5
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 24 9.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 24 9.5
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 154 bits (373), Expect = 5e-39
Identities = 72/84 (85%), Positives = 78/84 (92%)
Frame = +1
Query: 1 AKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFG 180
AKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFG
Sbjct: 47 AKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFG 106
Query: 181 RKGHAVGDIPGVRFKVVKVANVSL 252
RKG A GDIPGVRFKVVKVA V L
Sbjct: 107 RKGKAKGDIPGVRFKVVKVAGVGL 130
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 154 bits (373), Expect = 5e-39
Identities = 72/84 (85%), Positives = 78/84 (92%)
Frame = +1
Query: 1 AKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFG 180
AKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFG
Sbjct: 47 AKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFG 106
Query: 181 RKGHAVGDIPGVRFKVVKVANVSL 252
RKG A GDIPGVRFKVVKVA V L
Sbjct: 107 RKGKAKGDIPGVRFKVVKVAGVGL 130
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 47.2 bits (107), Expect = 9e-07
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 4 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 183
+G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+ G GR
Sbjct: 52 RGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRG-GR 107
Query: 184 KGHAVGDIPGVRFKVVK 234
D PGV++ VV+
Sbjct: 108 ----AQDCPGVQYHVVR 120
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 1.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 170 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 54
++S S F S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 263 VESRRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVT 102
+E ++ L TT++ TP PT + +TS S+++S + + AVT
Sbjct: 140 IEGNKEILKKSTTIRSTPVREPTKAISVASMSTSPSNYASRASSPDMKSSAAVT 193
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 230 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 120
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 383 HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFV 261
HN Y++ Y T K++ R +++HN W+ L F+
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFI 219
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 118 PRDGCLNHIEENDEVLVAGFGRKGHAVG 201
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 23.8 bits (49), Expect = 9.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 136 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLLSTKR 270
N +E N+E+++ ++ A P V FKV+KV N++ + R
Sbjct: 584 NSLETNEELIIT---KEKFA---FPSVFFKVIKVKNITAYIQEIR 622
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 380 NIYYVLGFYIL*TYKQRASRQQVTYHNV 297
N ++ LGF L + R S ++V+Y N+
Sbjct: 226 NFFFTLGFMALGVFFFRRSLKKVSYFNL 253
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 23.8 bits (49), Expect = 9.5
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 139 HIEENDEVLVAGFGRKGHAVGDIP-GVRFKVVKVANVSLLLSTKRKRS 279
H++ + E LV+ FG + ++G + G R ++ V+ S+ LST+ K +
Sbjct: 494 HLQVSYERLVSEFGARA-SLGKVQVGYRETLIDVSFNSVTLSTENKEN 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,835
Number of Sequences: 5004
Number of extensions: 29921
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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