Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40432
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0296 - 14041699-14041851,14042623-14042736,14044055-140442...    29   3.9  
04_03_0030 + 9747022-9747329,9747415-9747463,9747566-9747617,975...    29   3.9  
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875...    28   5.2  
03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290     28   6.8  
11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529...    27   9.0  
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    27   9.0  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    27   9.0  

>04_03_0296 -
           14041699-14041851,14042623-14042736,14044055-14044209,
           14049337-14049388,14049491-14049539,14049622-14049929
          Length = 276

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 2   EHRDWANGGDGGVDAPRRER-DAQRGVRRATNLGYSL 109
           E  D +N GDG  +A R+ R D +R  RRA   G  L
Sbjct: 54  EDSDDSNAGDGAGEALRKSRNDLKREARRAVQWGMDL 90


>04_03_0030 +
           9747022-9747329,9747415-9747463,9747566-9747617,
           9752742-9752896,9754217-9754330,9755104-9755256
          Length = 276

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 2   EHRDWANGGDGGVDAPRRER-DAQRGVRRATNLGYSL 109
           E  D +N GDG  +A R+ R D +R  RRA   G  L
Sbjct: 54  EDSDDSNAGDGAGEALRKSRNDLKREARRAVQWGMDL 90


>04_03_0963 +
           21285160-21285579,21286585-21286635,21287017-21287502,
           21287866-21287961
          Length = 350

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 415 RHRFRYIIQMVSLEPEKTMKMV*HLKLNNINCAFLQCLSPHVKSKLAI 558
           +H+   +   +S + +K++  V H++LN  +    + L+P  K KLA+
Sbjct: 295 KHQIDVVTSTISADHDKSLFSV-HVRLNEASLQSTEGLTPEAKYKLAV 341


>03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290
          Length = 286

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 41  DAPRRERDAQRGVRRATNLGYSLFHRMDCNYLIFNSFLY 157
           D P R R A R VR A ++     H  + + L+FNS+L+
Sbjct: 240 DHPLRHRVADRTVR-AASINKHAAHWTNADVLVFNSYLW 277


>11_06_0676 +
           26152192-26152367,26152669-26152708,26152857-26152966,
           26153886-26153934,26154157-26154206,26154606-26155150,
           26155583-26155743,26156231-26156440,26156525-26156690,
           26156765-26156869,26157465-26157760
          Length = 635

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 5   HRDWANGGDGGVDAPRRERDAQRGV 79
           H D A GG GGV +PR +R  + G+
Sbjct: 26  HVDAAAGGGGGVASPRGKRQLRSGM 50


>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 255 ITMSYSSRYPCSCNRKHANTHI 320
           IT+   SR+ CSCN+ HA++ +
Sbjct: 199 ITIRCRSRFTCSCNQFHADSTV 220


>01_01_0328 -
           2664412-2664535,2665388-2665465,2667784-2667895,
           2668344-2668410,2668473-2668562,2668672-2668787,
           2668999-2671924
          Length = 1170

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -1

Query: 462 LWFQGNHLNNIPKSMSDMLHVLMLLRF*ANLTATSDKNL*TSL*VIFLYEYLHVFCCNYK 283
           L   G  +  IP+S+ ++L    LLR   +L+ T  K L  S+  +   EYL + CC + 
Sbjct: 561 LVLSGTSIQVIPESVGNLL----LLRL-LDLSYTKIKKLPESIGNLTSLEYLSLHCCRHL 615

Query: 282 D 280
           D
Sbjct: 616 D 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,611
Number of Sequences: 37544
Number of extensions: 289719
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)