Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40432
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005021-1|AAH05021.1|  425|Homo sapiens adaptor-related protein...    31   4.3  
BC003612-1|AAH03612.1|  423|Homo sapiens adaptor-related protein...    31   4.3  
BC003387-1|AAH03387.1|  423|Homo sapiens adaptor-related protein...    31   4.3  
AK222946-1|BAD96666.1|  423|Homo sapiens adaptor-related protein...    31   4.3  
AF020797-1|AAD25870.2|  423|Homo sapiens AP-mu chain family memb...    31   4.3  

>BC005021-1|AAH05021.1|  425|Homo sapiens adaptor-related protein
           complex 1, mu 2 subunit protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 408 LHVLMLLRF*ANLTATSDKNL*TSL*VIFLYEYLHVFCCNYKDI 277
           +H L +      L AT+ KN   SL   FLY+ + VFC  +K++
Sbjct: 55  VHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKEL 98


>BC003612-1|AAH03612.1|  423|Homo sapiens adaptor-related protein
           complex 1, mu 2 subunit protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 408 LHVLMLLRF*ANLTATSDKNL*TSL*VIFLYEYLHVFCCNYKDI 277
           +H L +      L AT+ KN   SL   FLY+ + VFC  +K++
Sbjct: 55  VHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKEL 98


>BC003387-1|AAH03387.1|  423|Homo sapiens adaptor-related protein
           complex 1, mu 2 subunit protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 408 LHVLMLLRF*ANLTATSDKNL*TSL*VIFLYEYLHVFCCNYKDI 277
           +H L +      L AT+ KN   SL   FLY+ + VFC  +K++
Sbjct: 55  VHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKEL 98


>AK222946-1|BAD96666.1|  423|Homo sapiens adaptor-related protein
           complex 1, mu 2 subunit variant protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 408 LHVLMLLRF*ANLTATSDKNL*TSL*VIFLYEYLHVFCCNYKDI 277
           +H L +      L AT+ KN   SL   FLY+ + VFC  +K++
Sbjct: 55  VHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKEL 98


>AF020797-1|AAD25870.2|  423|Homo sapiens AP-mu chain family member
           mu1B protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 408 LHVLMLLRF*ANLTATSDKNL*TSL*VIFLYEYLHVFCCNYKDI 277
           +H L +      L AT+ KN   SL   FLY+ + VFC  +K++
Sbjct: 55  VHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKEL 98


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,608,253
Number of Sequences: 237096
Number of extensions: 1592902
Number of successful extensions: 3398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3395
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)