Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40432
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    31   0.61 
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    27   10.0 

>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 435 YSNGF--PGTRENNENGLTFKA**YKLCISSMFVTTREKQISDKNSRTYKSS 584
           Y  GF  PG+  N   G+ +K    +L  + ++V  R+K +SDKNS  +K S
Sbjct: 45  YEMGFFKPGSSSNFYIGMWYK----QLSQTILWVANRDKAVSDKNSSVFKIS 92


>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 80  RRATNLGYSLFHRMDCNYLIFNSFLYHSCHEHSVID 187
           R    LG   FH M CN  +  + + H C E  + D
Sbjct: 112 RVGKGLGIDYFHCMKCNACMSRTLVEHVCREKCLED 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,872
Number of Sequences: 28952
Number of extensions: 250520
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)