Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40426
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   144   1e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   144   1e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   143   2e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.84 
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   2.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.4  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   3.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.4  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   4.5  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.9  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.8  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  144 bits (349), Expect = 1e-35
 Identities = 63/80 (78%), Positives = 73/80 (91%)
 Frame = +3

Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
           GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDG
Sbjct: 85  GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144

Query: 438 RTIRYPDPLIKVNDSIQLDI 497
           RTIRYPDPLIKVND+I+L++
Sbjct: 145 RTIRYPDPLIKVNDTIKLNL 164



 Score =  107 bits (256), Expect = 2e-24
 Identities = 45/60 (75%), Positives = 50/60 (83%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60



 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 38/63 (60%), Positives = 50/63 (79%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFI 685
           +I  FIKF++    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+
Sbjct: 168 KIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFV 227

Query: 686 IGK 694
           IG+
Sbjct: 228 IGE 230



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +1

Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
           + +  I+ QRLIKVDGKVRTD T+P
Sbjct: 59  REVKAILMQRLIKVDGKVRTDSTFP 83


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  144 bits (349), Expect = 1e-35
 Identities = 63/80 (78%), Positives = 73/80 (91%)
 Frame = +3

Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
           GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDG
Sbjct: 85  GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144

Query: 438 RTIRYPDPLIKVNDSIQLDI 497
           RTIRYPDPLIKVND+I+L++
Sbjct: 145 RTIRYPDPLIKVNDTIKLNL 164



 Score =  107 bits (256), Expect = 2e-24
 Identities = 45/60 (75%), Positives = 50/60 (83%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60



 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 38/63 (60%), Positives = 50/63 (79%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFI 685
           +I  FIKF++    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+
Sbjct: 168 KIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFV 227

Query: 686 IGK 694
           IG+
Sbjct: 228 IGE 230



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
           + +  I+ QRLI+VDGKVRTD T+P
Sbjct: 59  REVKAILMQRLIQVDGKVRTDSTFP 83


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  143 bits (346), Expect = 2e-35
 Identities = 62/80 (77%), Positives = 73/80 (91%)
 Frame = +3

Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
           GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDG
Sbjct: 85  GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144

Query: 438 RTIRYPDPLIKVNDSIQLDI 497
           RTIRYPDPLIKVND+I+L++
Sbjct: 145 RTIRYPDPLIKVNDTIKLNL 164



 Score =  107 bits (256), Expect = 2e-24
 Identities = 45/60 (75%), Positives = 50/60 (83%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60



 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 38/63 (60%), Positives = 50/63 (79%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFI 685
           +I  FIKF++    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+
Sbjct: 168 KIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFV 227

Query: 686 IGK 694
           IG+
Sbjct: 228 IGE 230



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +1

Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
           + +  I+ QRLIKVDGKVRTD T+P
Sbjct: 59  REVKAILMQRLIKVDGKVRTDSTFP 83


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 685 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 587
           Y  V+ P  EG     LD+H+   A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 440 HHPLPRPTYQSQRFHPVRHRNYEIMDFIK 526
           +H  P P Y      P RH + +I++ IK
Sbjct: 107 YHENPNPNYYKTCLDPYRHESVKILNIIK 135


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 467 QSQRFHPVRHRNYEIMDFIKFES 535
           ++++ HPVRH  YE    + FE+
Sbjct: 5   ENEKIHPVRHSKYEDKSKLPFET 27


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 524 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 628
           KFE   LC + G   L R+G  +  E   GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 267  DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 443
            +V S+EK N++F + Y+V  +     +   +   K+  ++ ++   KNVP + V H    
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777

Query: 444  IR 449
            ++
Sbjct: 1778 LK 1779


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 434 WPHHPLPRPTYQSQR 478
           WPHH LP   + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 271 LSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 381
           LS+++ L+NCF+ S  +  D    +  LR L    +K
Sbjct: 424 LSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 362 SLLRGDTVDCESALNIID*TKQ 297
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,235
Number of Sequences: 5004
Number of extensions: 67167
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)