Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40425
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    28   0.075
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 127 EEPRHHQQHQAATRGAPEQSERHDLRQDEAG 219
           E P  HQQH  A    P+Q++    +  +AG
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQSVQQQSQQAG 49



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +1

Query: 127 EEPRHHQQHQAATRGAPEQSERHDLRQDE 213
           E   HHQ H       P+Q +     Q +
Sbjct: 165 ESQMHHQMHTQHPHMQPQQGQHQSQAQQQ 193


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 118 ARGEEPRHHQQHQAATRGAP 177
           A G +P  HQ  QA  RG+P
Sbjct: 20  APGPQPSPHQSPQAPQRGSP 39


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 327 LNFRIPDLQQILSDLVDILQR 265
           +NF +P+LQ  L+ LVD+ ++
Sbjct: 312 VNFALPELQHNLNILVDMCEQ 332


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 388 DLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQ-RVKV 510
           D+V   A +ST    +L K      A F +L E++EQ R+K+
Sbjct: 278 DIVGFTAISSTYSASELVKILNELFARFDQLSERFEQLRIKI 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,754
Number of Sequences: 438
Number of extensions: 2727
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)