Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40425
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 36 0.034
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 33 0.18
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 32 0.32
At3g61390.2 68416.m06872 U-box domain-containing protein several... 32 0.32
At3g61390.1 68416.m06871 U-box domain-containing protein several... 32 0.32
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 32 0.32
At4g17210.1 68417.m02588 myosin heavy chain-related contains wea... 32 0.42
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 32 0.42
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 31 0.56
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 31 0.74
At2g22795.1 68415.m02704 expressed protein 31 0.98
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 30 1.3
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 30 1.3
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 30 1.7
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 30 1.7
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 29 3.0
At3g28770.1 68416.m03591 expressed protein 29 3.0
At1g14840.1 68414.m01775 expressed protein 29 3.0
At1g03350.1 68414.m00314 BSD domain-containing protein contains ... 29 3.0
At4g24970.1 68417.m03578 ATP-binding region, ATPase-like domain-... 29 3.9
At1g56040.1 68414.m06434 U-box domain-containing protein contain... 29 3.9
At1g44780.1 68414.m05130 expressed protein ; expression supporte... 29 3.9
At5g65520.1 68418.m08243 expressed protein 28 5.2
At5g37000.1 68418.m04436 exostosin family protein contains Pfam ... 28 5.2
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 28 5.2
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 28 6.9
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 28 6.9
At5g08550.1 68418.m01017 expressed protein 28 6.9
At2g46980.2 68415.m05869 expressed protein 28 6.9
At2g46980.1 68415.m05868 expressed protein 28 6.9
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 6.9
At1g68370.1 68414.m07809 gravity-responsive protein / altered re... 28 6.9
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 28 6.9
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 27 9.1
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ... 27 9.1
At1g73860.1 68414.m08552 kinesin motor protein-related similar t... 27 9.1
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 9.1
At1g59077.1 68414.m06670 hypothetical protein 27 9.1
At1g58766.1 68414.m06659 hypothetical protein 27 9.1
At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf... 27 9.1
At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro... 27 9.1
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 35.5 bits (78), Expect = 0.034
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Frame = +1
Query: 178 EQSERH-DLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNS--EVKAMEDRFQ 348
E SER D E ++ + Q+ +S +++ +LE+ + E+K +E+ Q
Sbjct: 298 EISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQ 357
Query: 349 AMEARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRV 504
+ +A+ + ++ + ++ +DLK+ ++ A + LRE+Y QRV
Sbjct: 358 GAARQAQAKADEIAKLMHENEQLKSVTEDLKR--KSNEAEVESLREEYHQRV 407
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 33.1 bits (72), Expect = 0.18
Identities = 34/168 (20%), Positives = 73/168 (43%), Gaps = 1/168 (0%)
Frame = +1
Query: 1 RHGREPDSAFELQG*KRKR*TCSSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPE 180
R +E + A + + KR+ E K E E + E + ++ + A
Sbjct: 445 RRRKEEEEARKREEAKRRE---EEEAKRREEEETERKKREEEEARKREEERKREEEEAKR 501
Query: 181 QSERHDLRQDEAGQ-ESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAME 357
+ E R++EA Q +R ++++A ++ + K+ E+ + E + + E
Sbjct: 502 REEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEE 561
Query: 358 ARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQR 501
AR K E+ER KR + + ++ E + + +++RE+ E++
Sbjct: 562 AR-KREEER-----KREEEMAKRREQERQRKERE-EVERKIREEQERK 602
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 32.3 bits (70), Expect = 0.32
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Frame = +1
Query: 31 ELQG*KRKR*TCSSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERH-DLRQ 207
ELQ R++ + V ++ +L+A G+ + E +++ + G E SE++ DL Q
Sbjct: 73 ELQRCLREKDSVVKRVNDVNDKLRAN-GEDKYREFEEEKRNMMS--GLDEASEKNIDLEQ 129
Query: 208 DEAGQESGVADRSSDQQVASLKDIN--QITKDLLEIRNSE--VKAMEDRFQAMEARYKAE 375
+ + VA K I + K + E+R + V ME+ +E + K +
Sbjct: 130 KNNVYRAEIEGLKGLLAVAETKRIEAEKTVKGMKEMRGRDDVVVKMEEEKSQVEEKLKWK 189
Query: 376 KERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVKV*SL 519
KE++ + + + + D KKE+E + + K L E Y + K+ S+
Sbjct: 190 KEQFKHLEEAYEKLKNLFKDSKKEWEEEKS--KLLDEIYSLQTKLDSV 235
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 32.3 bits (70), Expect = 0.32
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +1
Query: 268 LKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKE 447
+KD + + K L + +E + RF+A + R +AEK D + K Q ++LK+
Sbjct: 214 VKDDDHLIK--LAVTEAEASKRKARFEACK-REEAEKTAVDALKKAKQWENVYFEELKQR 270
Query: 448 YETQLAIFKELREKYEQR 501
ET+ A+ K E + R
Sbjct: 271 KETEKALRKRNDELEKMR 288
>At3g61390.1 68416.m06871 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 373
Score = 32.3 bits (70), Expect = 0.32
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +1
Query: 268 LKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKE 447
+KD + + K L + +E + RF+A + R +AEK D + K Q ++LK+
Sbjct: 214 VKDDDHLIK--LAVTEAEASKRKARFEACK-REEAEKTAVDALKKAKQWENVYFEELKQR 270
Query: 448 YETQLAIFKELREKYEQR 501
ET+ A+ K E + R
Sbjct: 271 KETEKALRKRNDELEKMR 288
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 32.3 bits (70), Expect = 0.32
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Frame = +1
Query: 178 EQSERHDLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAME 357
+ + + L D + AD+ + + KDIN + + +++RN V+++ ++ ++ E
Sbjct: 538 DDEDDYPLLSDVEMEMESEADKIISEHLLKFKDINGLVEQNVKLRNL-VRSLSEQIESRE 596
Query: 358 ARYKAEKERYDLVLKRAQTSTTINDDLKKEYE---------TQLAIFKELREKYEQRV 504
K E DL K + S + LK+ E T +A++K L E+ EQ++
Sbjct: 597 TELK-ETFEVDLKNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYEE-EQKL 652
>At4g17210.1 68417.m02588 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P14105 myosin heavy chain,
nonmuscle (Cellular myosin heavy chain) (NMMHC) [Gallus
gallus]
Length = 527
Score = 31.9 bits (69), Expect = 0.42
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Frame = +1
Query: 70 SEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQESGVADRSS 249
S V +L EL + R E ++ Q A G ++ R + DE +E+ + +
Sbjct: 315 SLVGSLTVELDGVQRENR-ELKGKEKERQEAEEGEWVEASR---KVDEIMREAEKTRKEA 370
Query: 250 DQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERY-DLVLKRAQTSTTI 426
++ ++ ++ + + VK +E +A+E AEK D+ + + +
Sbjct: 371 EEMRMNVDELRREAAAKHMVMGEAVKQLEIVGRAVEKAKTAEKRAVEDMKVLTEKKESLT 430
Query: 427 NDDLKKEYETQLAIFKELREKYEQRVKV*SLKTR 528
+D+ K+ L ++ELR K+E+ ++ K +
Sbjct: 431 HDEPDKKIRISLKEYEELRGKHEESERMVQFKAK 464
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 31.9 bits (69), Expect = 0.42
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = +1
Query: 175 PEQSERHDLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMED---RF 345
PE+ + ++ Q E D S + A K++N + + E+ NS K +D R
Sbjct: 576 PEKDMKREIVQALRSIEREYDDLSLKSREAE-KEVNMLQMKIQEVNNSLFKHNKDTESRK 634
Query: 346 QAMEARYKAEKER---YDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVK 507
+ +E++ +A K+ D K +++ DD K+EY + +++ E +E+R +
Sbjct: 635 RYIESKLQALKQESVTIDAYPKLLESAKDKRDDRKREYNMANGM-RQMFEPFEKRAR 690
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 31.5 bits (68), Expect = 0.56
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Frame = +1
Query: 241 RSSDQQVASLKDINQITKDL--LE--IRNSEVKAMEDRFQAME-ARYKAEKER---YDLV 396
R D++ L+ Q+ K LE I + E+ ++ + +E AR KA +E YD V
Sbjct: 201 RELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDAREKLEQVEVARTKASEESTKMYDRV 260
Query: 397 LKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVKV*SLKTRG*KLRLRAEARRDPVT 576
K S ++++ LK+ + ++KE Q+ K KT KL L + +D +T
Sbjct: 261 EKAQDDSKSLDESLKELTKELQTLYKEKETVEAQQTKALKKKT---KLELDVKDFQDRIT 317
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 31.1 bits (67), Expect = 0.74
Identities = 21/87 (24%), Positives = 42/87 (48%)
Frame = +1
Query: 235 ADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQT 414
+D+ S + +I ++ K +E N E+ ++ + + +A + + +LK+ +
Sbjct: 106 SDKKSKRNGRGENEI-ELLKKQMEDANLEIADLKMKLATTDEHKEAVESEHQEILKKLKE 164
Query: 415 STTINDDLKKEYETQLAIFKELREKYE 495
S I +L+ E E + KEL EK E
Sbjct: 165 SDEICGNLRVETEKLTSENKELNEKLE 191
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 30.7 bits (66), Expect = 0.98
Identities = 23/111 (20%), Positives = 49/111 (44%)
Frame = +1
Query: 169 GAPEQSERHDLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQ 348
G +++ +++ G+ES D+ KD TK+ E +S+ + M+ +
Sbjct: 414 GGSQETSEVSSQEESKGKESETKDKEESSSQEESKDRETETKE-KEESSSQEETMDKETE 472
Query: 349 AMEARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQR 501
A E + +E+ + S+ + + +KE ET+ +EK E++
Sbjct: 473 AKEKVESSSQEKNEDKETEKIESSFLEETKEKEDETKEKEESSSQEKTEEK 523
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 313 NSEVKAMEDRFQAMEARYKAEKERYDLV-LKRAQTSTTINDDLKKEYETQLAIFKELREK 489
N +K ME+ + EAR + E +R + V +++A+ + L++E E + I KE REK
Sbjct: 626 NEPLKRMEEETRIKEARLREENDRRERVAVEKAENEKRLKAALEQE-EKERKI-KEAREK 683
Query: 490 YE 495
E
Sbjct: 684 AE 685
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/104 (24%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = +1
Query: 199 LRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEK 378
LR++ +E +++ +++ LK + + +I+ + KA +R +A+EAR KAE+
Sbjct: 643 LREENDRRERVAVEKAENEK--RLKAALEQEEKERKIKEAREKAENER-RAVEAREKAEQ 699
Query: 379 ERYDLVLKRAQTSTTINDDLKKEYET-QLAIFKELREKYEQRVK 507
ER + ++ + + + +KE E ++ L ++ E+R+K
Sbjct: 700 ER--KMKEQQELELQLKEAFEKEEENRRMREAFALEQEKERRIK 741
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +1
Query: 76 VKNLETELQAAPGQARGEEPRHHQQHQAATR-GAPEQSERHDLRQD-EAGQESGVADRSS 249
V +E+++Q P + E +AT+ AP ++ + + + G+E D+S
Sbjct: 845 VTRVESKVQNPPASIQTSENTEAVMKSSATKLSAPTLLKKSKVSEGLKLGKEQTKKDKSD 904
Query: 250 DQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEAR 363
D ++ +K +N K+ + N E K E EAR
Sbjct: 905 DAKIKEIKKLN--LKNPVNNVNKEDKGQEKEVNQGEAR 940
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/51 (39%), Positives = 20/51 (39%)
Frame = +3
Query: 273 GYQPDH*GSAGDQEF*S*GHGGPLPSDGGALQGGEGAIRPGAEARPDQHHH 425
GY P AG HG P PS G GG GAI G A HH
Sbjct: 69 GYPPAGYPPAGYPAHGYPSHGYPRPSHSGHHHGGIGAIIAGGVAAAAGAHH 119
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 46 KRKR*TCSSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQE 225
+R+R + K + + Q AR E+ ++ QA +++ Q+E+
Sbjct: 142 ERQRVIYEEQKKLAQHQAQTKSQMARYEDELARKRMQAENEAQRTRNQELVKMQEESAIR 201
Query: 226 SGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAM-EDRFQAMEARYKAEKERYDLV 396
VA R++++++ + + + K +E VKAM E +A E++ + R LV
Sbjct: 202 REVARRATEEEIQAQRRQTEREKAEIERETIRVKAMAEAEGRARESKLSEDVNRRMLV 259
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 133 PRHHQQHQAATRGAPEQSERHDLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIR 312
PR ++ A R E +E + +DE G E R D++ KDL +R
Sbjct: 650 PRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKKGLTLKDLGYMR 709
Query: 313 NSEVKAME 336
VKA +
Sbjct: 710 AKAVKAKQ 717
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/132 (16%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Frame = +1
Query: 73 EVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQESGVADRSSD 252
E K+ + + ++ ++ E + +++ ++ T+ ++ ++ QD+ +E +R S
Sbjct: 992 ENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKEKKKS--QDKKREEKDSEERKSK 1049
Query: 253 QQVASLKDIN-----QITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTS 417
++ +D+ + TK+ E N + K ED+ + + + ++E K ++
Sbjct: 1050 KEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESK 1109
Query: 418 TTINDDLKKEYE 453
+ ++ KK+ E
Sbjct: 1110 SRKKEEDKKDME 1121
>At1g14840.1 68414.m01775 expressed protein
Length = 604
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 181 QSERHDLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAM-EDRFQAME 357
Q+E LR E +E V + + +++ + + ++ ++LLE +N E+K + E++ +M
Sbjct: 73 QAEIKALRLSERQREKAVEELT--EELGKMAEKLKLIENLLESKNLEIKKINEEKKASMA 130
Query: 358 ARYKAE 375
A++ AE
Sbjct: 131 AQFAAE 136
>At1g03350.1 68414.m00314 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 470
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 79 KNLETE-LQAAPGQARGEEPRHHQQHQAATRGAPEQSERHD 198
K++ TE L ++ + P+H ++H+ + PEQSE +D
Sbjct: 5 KSVFTEDLDPPETESESDSPKHSEEHEHPEQEHPEQSESND 45
>At4g24970.1 68417.m03578 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 707
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 352 MEARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVKV 510
++ + EKER + Q S +++KKE E + IF E R++ + +V
Sbjct: 623 LQEELRREKERRKALEVEVQLSRQKIEEMKKEQENLIEIFSEERDRRDGEEEV 675
>At1g56040.1 68414.m06434 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 437
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/88 (28%), Positives = 46/88 (52%)
Frame = +1
Query: 292 KDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIF 471
+D L ++ +V+ ME Q +E+ YK E+ + L K + +KE ET LAI
Sbjct: 159 EDALAMKKEDVEMME---QLLES-YKEEQGKLQLQAKALEHKLEAELRHRKETETLLAIE 214
Query: 472 KELREKYEQRVKV*SLKTRG*KLRLRAE 555
++ EK ++++ +++ RL+AE
Sbjct: 215 RDRIEKV--KIQLETVENEIDNTRLKAE 240
>At1g44780.1 68414.m05130 expressed protein ; expression supported
by MPSS
Length = 471
Score = 28.7 bits (61), Expect = 3.9
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Frame = +1
Query: 118 ARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQESGVADRSSDQQVASLKD-INQITK 294
+ + + + T+ EQSE H+ D AG+E+ + D + K+ + + K
Sbjct: 89 SENSQETEREDDEIPTKEVAEQSEEHEPMND-AGEENTSKREAKDVKGKGNKETLQRDIK 147
Query: 295 DLLEIR------NSEVKAMEDRFQAMEARYKAEKERYDLVLK 402
L R NSE M + +E K EKE DL K
Sbjct: 148 RALRKRASYIKANSETITMASLRRLLEEDLKLEKESLDLFKK 189
>At5g65520.1 68418.m08243 expressed protein
Length = 206
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/91 (21%), Positives = 37/91 (40%)
Frame = +1
Query: 157 AATRGAPEQSERHDLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAME 336
A R P++S+ L + + V S D + + + DLL S +K+ +
Sbjct: 56 ARARTTPKKSQSQSLAKTALTEADNVIAISPDDAAGHI--VRALALDLLGHHTSALKSFD 113
Query: 337 DRFQAMEARYKAEKERYDLVLKRAQTSTTIN 429
+ + ER D ++KRA+ +N
Sbjct: 114 MALTYPRLKSLSVGERADALVKRAEMKLAVN 144
>At5g37000.1 68418.m04436 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 547
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 292 KDLLEIRNSEVKAMEDRFQAMEARYKAEKERY 387
KD+ +RN + EDR+ M+AR KA ++ +
Sbjct: 507 KDIPNLRNILLSIPEDRYIGMQARVKAVQQHF 538
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 211 EAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERY 387
E+ ++ G S D + +S D D + A +DR+ + + RY ++ +RY
Sbjct: 136 ESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRY 194
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 27.9 bits (59), Expect = 6.9
Identities = 33/176 (18%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
Frame = +1
Query: 73 EVKNLETELQAAPGQARGE-EPRHHQQHQAATRGAPEQSE-RHDLRQDEAGQESGVADRS 246
E N++ E A Q + + E + ++ + + E SE ++++ A G+ +
Sbjct: 593 ERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQK 652
Query: 247 SDQQVA---SLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTS 417
+ + +++ ++D + E K E+R Q+++ + E E + LKR
Sbjct: 653 RELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAE 712
Query: 418 TTINDDLKKEYETQLAIFKELREKYEQ-RVKV*SLKTRG*KLRLRAEARRDPVTKI 582
++K + E + + EL++ E+ +V+ L+T+ LR + R + ++
Sbjct: 713 RL---EIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEEL 765
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.9 bits (59), Expect = 6.9
Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Frame = +1
Query: 73 EVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQESGVADRSSD 252
++K+ E E +A + + Q E E D +++ + S + +S+D
Sbjct: 352 DLKDAEEENKAISSKNLEIMDKLEQAQNTIKELMDELGELKDRHKEKESELSSLV-KSAD 410
Query: 253 QQVASLK--------DINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRA 408
QQVA +K + +++ +L+I N E++ + Q + + KE + + +
Sbjct: 411 QQVADMKQSLDNAEEEKKMLSQRILDISN-EIQEAQKTIQEHMSESEQLKESHGVKEREL 469
Query: 409 QTSTTINDDLKKEYETQLAIFKELREKYEQRV 504
I++ ++E T+L+ + + EQRV
Sbjct: 470 TGLRDIHETHQRESSTRLSELETQLKLLEQRV 501
>At5g08550.1 68418.m01017 expressed protein
Length = 908
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 229 GVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKER 384
G+ D + SLKD+ + DL E + ED F A +A+KER
Sbjct: 147 GLIKPPQDHEQQSLKDVVKQVSDLDFDEEGEEEQHEDAFADQAAIIRAKKER 198
>At2g46980.2 68415.m05869 expressed protein
Length = 516
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +1
Query: 49 RKR*TCSSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQES 228
RK T S + + L + G +G H + + + P S +H L + G+
Sbjct: 94 RKLGTLESVLCKQTSSLSGSKGLNKGLNGAHQTPARESFQNCPISSPQHSLGELNGGRND 153
Query: 229 GVADRSSDQ 255
V DRS ++
Sbjct: 154 RVMDRSPER 162
>At2g46980.1 68415.m05868 expressed protein
Length = 516
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +1
Query: 49 RKR*TCSSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQES 228
RK T S + + L + G +G H + + + P S +H L + G+
Sbjct: 94 RKLGTLESVLCKQTSSLSGSKGLNKGLNGAHQTPARESFQNCPISSPQHSLGELNGGRND 153
Query: 229 GVADRSSDQ 255
V DRS ++
Sbjct: 154 RVMDRSPER 162
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/85 (18%), Positives = 41/85 (48%)
Frame = +1
Query: 205 QDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKER 384
+ ++ ++S A + + + + Q T+D E+ +++ +M+DR A + + K E E+
Sbjct: 374 EPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEV-SADSASMDDRSNAEQPKEKEEVEK 432
Query: 385 YDLVLKRAQTSTTINDDLKKEYETQ 459
+ + + + K E+E +
Sbjct: 433 EKAKDTKKEKGKEKDSEKKMEHEKE 457
>At1g68370.1 68414.m07809 gravity-responsive protein / altered
response to gravity protein (ARG1) identical to Altered
Response to Gravity [Arabidopsis thaliana] GI:4249662;
contains Pfam profile PF00226 DnaJ domain
Length = 410
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 241 RSSDQQVASLKDIN-QITKDLLEIRNSEVKAMED--RFQAMEARYKAEKERYDLVLKRAQ 411
++ + LK+I QI + E+R E + + RFQ + RY EK+ D +LK+
Sbjct: 285 KTYEDTTEKLKEIEAQILRKRNELRQFETEYRKALARFQEVTNRYTQEKQTVDELLKQRD 344
Query: 412 T 414
T
Sbjct: 345 T 345
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/115 (20%), Positives = 51/115 (44%)
Frame = +1
Query: 67 SSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQESGVADRS 246
+S++ L+ +A P +++GE R + H + E+ E + +GQ +R+
Sbjct: 1522 TSKISKLKISSKAKPKESKGESER--RSHSLMPTFSRERGESESHKPSVSGQPLSSTERN 1579
Query: 247 SDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQ 411
Q AS + I + L + + ++ + + E+ + LV+KR++
Sbjct: 1580 ---QAASSRHTISIPRPSLSMDTDQAESRRPHL-VIRPPTEREQPQKKLVIKRSK 1630
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 800
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 127 EEPRHHQQHQAATRGAPEQSERHDLRQDEAGQES--GVADRSSDQQVASLKDINQITKD- 297
E P+ + G E+ E+HD D A QE+ ++D + + K+ Q ++
Sbjct: 500 ENPKQGDEEMEREEGKEEKVEKHDEYNDAADQEAYINLSDDEDNDTAPTEKESQQKKEET 559
Query: 298 -LLEIRNSEVKAMEDRFQAMEA 360
+L+ N E D + EA
Sbjct: 560 NVLKEENVEEHDEHDETEDQEA 581
>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
PF03556: Domain of unknown function (DUF298)
Length = 295
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 411 DQHHHQ-RRPQEGVRNSTRYI*GIEREIRTKSESLVAENERLKAPTQGGSS 560
D+HH RRP G+RN I G++R+ K++ + + TQ SS
Sbjct: 208 DEHHKDYRRPHTGLRN----IPGLKRKTSKKNDEEEEDEDEEVLETQNSSS 254
>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
kinesin-C GB:AAF04841 from [Strongylocentrotus
purpuratus]
Length = 1030
Score = 27.5 bits (58), Expect = 9.1
Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 15/162 (9%)
Frame = +1
Query: 67 SSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSERHDLRQDEAGQESGVADRS 246
+ +++ +ETE ++ EE + H++ +Q+++H+L QE R
Sbjct: 207 TQQLRQIETE------KSMWEEKKKHEEEDMVK--LMKQNDQHNLEISALKQELETTKRK 258
Query: 247 SDQQVASLKDINQITKDLL-EIRNSEVKAME------DRF--------QAMEARYKAEKE 381
+QQ + ++ + K E + +E + M+ D+F Q +E KA ++
Sbjct: 259 YEQQYSQIESQTKTEKSKWEEQKKNEEEDMDKLLKENDQFNLQISALRQELETTRKAYEQ 318
Query: 382 RYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVK 507
+ + + +TT + KE E + + + E+RVK
Sbjct: 319 QCSQMESQTMVATTGLESRLKELEQEGKVVNTAKNALEERVK 360
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 12 RAGLRLRASRLKEEEIDLLKRGQELGDG 95
R GL+ RA ++E E+D K+ + LG+G
Sbjct: 1322 RRGLKRRAEDVEESELDSAKKFKLLGEG 1349
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 12 RAGLRLRASRLKEEEIDLLKRGQELGDG 95
R GL+ RA ++E E+D K+ + LG+G
Sbjct: 258 RRGLKRRAEDVEESELDSAKKFKLLGEG 285
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 12 RAGLRLRASRLKEEEIDLLKRGQELGDG 95
R GL+ RA ++E E+D K+ + LG+G
Sbjct: 258 RRGLKRRAEDVEESELDSAKKFKLLGEG 285
>At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 311
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 351 DGGALQGGEGAIRPGAEA-RPDQHHHQRRPQEGV 449
+GG QGG GA R RP+ HH Q +PQ G+
Sbjct: 2 EGGYEQGG-GASRYFHNLFRPEIHHQQLQPQGGI 34
>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
protein (GI:11863170) {Zea mays}
Length = 705
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 154 QAATRGAPEQSERHDLRQDEAGQESGVADRSSDQQVASLKDINQITKDLLEIRNSE---- 321
+A+ + P SE+ L A + V D V + KD+N + KDLL E
Sbjct: 191 EASEKEIPIASEQ-SLESATAAHVTTVDREVDDSTVDTDKDLNNVLKDLLACSREELEGD 249
Query: 322 --VKAMEDRFQ 348
+K +E+R Q
Sbjct: 250 GAIKLLEERLQ 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,563,871
Number of Sequences: 28952
Number of extensions: 176998
Number of successful extensions: 940
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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