Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40424
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_22183| Best HMM Match : PSD5 (HMM E-Value=1.2)                      30   1.5  

>SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 334 YKMYSYSKCF-ELKSNNL--RSLLYKINISGCEMKSKYSVL*NSD 459
           Y  ++YS CF EL S  +  R L++  +   C+M++KY V+  +D
Sbjct: 474 YSHFAYSSCFNELSSTRILVRKLIWGDDTVSCDMRNKYDVVIAAD 518


>SB_22183| Best HMM Match : PSD5 (HMM E-Value=1.2)
          Length = 286

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 394 VDFLNYYSLIQSILNNC-TFYIKSET*GNVKACKSIRSFKL 275
           VD ++YY+ ++ +L+ C +FY++ E     K C S+R+  L
Sbjct: 145 VDRVSYYTTVRKVLDQCASFYVEDEAMRKAK-CTSLRTIFL 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,751
Number of Sequences: 59808
Number of extensions: 295790
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)