Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40424
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.3  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 460 VERIKLNHVASNVTLRTSPLRHARAVCDYKAVNTLSIDTNKLKIIANNSLSSEPNLKKKS 639
           VE++ + +V++       P     A   YK + TLS DT+    +  N+ S   NL    
Sbjct: 1   VEKVVMPYVSTMPKSLKEPCDGCAAPYGYKNIMTLSQDTSHFASLVRNA-SVSGNLDAPE 59

Query: 640 G 642
           G
Sbjct: 60  G 60


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +1

Query: 454  SDVERIKLNHVASNVTLRTSPLRHARAVCD--YKAVNTLSIDTNKL---KIIANNSLSSE 618
            SD +++  +   S+  L    L+H RAV D  Y   ++ S D + +   K +     SS 
Sbjct: 1787 SDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSR 1846

Query: 619  PNLK 630
             +L+
Sbjct: 1847 SSLR 1850


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +1

Query: 454  SDVERIKLNHVASNVTLRTSPLRHARAVCD--YKAVNTLSIDTNKL---KIIANNSLSSE 618
            SD +++  +   S+  L    L+H RAV D  Y   ++ S D + +   K +     SS 
Sbjct: 1783 SDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSR 1842

Query: 619  PNLK 630
             +L+
Sbjct: 1843 SSLR 1846


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 490 SNVTLRTSPLRHARAVCDYKAVNTLSIDTNKLKI 591
           S + L   P  HA    +YK +  + I  NKL I
Sbjct: 241 SAIDLDIGPPLHADQAEEYKKIQQILIRMNKLCI 274


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 98  VGLRFKSDSIYESV 57
           +GLR +SDS+ E+V
Sbjct: 228 IGLRIQSDSLAENV 241


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 514 PLRHARAVCD 543
           PLRH R  CD
Sbjct: 56  PLRHRRVTCD 65


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 311 ITSRLRFNIKCTVIQNALN 367
           ITS  R N+KC++++ + N
Sbjct: 74  ITSYHRINLKCSLVEFSEN 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,564
Number of Sequences: 438
Number of extensions: 3190
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)