Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40423
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 30 1.6
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 29 3.8
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 3.8
09_02_0456 - 9525067-9525422,9525679-9528226 28 5.0
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 28 5.0
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 28 5.0
12_02_1168 + 26651863-26651974,26652087-26652290,26652392-266525... 28 6.6
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 28 6.6
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 27 8.7
02_04_0575 - 24000191-24000302,24000710-24000788,24001017-240011... 27 8.7
>12_02_1113 -
26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 315 INEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQI 425
I +HVN +A+LE K ++ +E K +++ Y K I
Sbjct: 304 IQQHVNQYASLECEFKDLKEKFTEETKERKDLYNKLI 340
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 282 IPQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQE 407
+ ++N E + EHV L IK + +H+KE+K +E
Sbjct: 219 LEKSNAELREQLEEHVVTIETLRTQIKISEAQHEKELKELKE 260
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 348 EDAIKTTNKEHDKEVKAKQEEYEK 419
E+ IK K+ +KE KAKQE+ EK
Sbjct: 538 EELIKEEEKKKEKEEKAKQEKEEK 561
>09_02_0456 - 9525067-9525422,9525679-9528226
Length = 967
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 153 PCNFLSPNMPPFFWQDIHYFQLNFR 79
PCN LS +PP FW H + L R
Sbjct: 402 PCNRLSGPVPPEFWGLPHVYLLELR 426
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 345 LEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKK 476
L+ A KT + E +KEV A + E + L + D + LKKK
Sbjct: 174 LKHAYKTLSSEKEKEVSALRAENDFVWNQLRTMENDYTDLLKKK 217
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 318 NEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYL 443
NEH L L ++ +E +E+KAKQ +YEK + ++ L
Sbjct: 730 NEHHKL-GELVKKLEQELQESKQELKAKQAQYEKSVSTVSEL 770
>12_02_1168 +
26651863-26651974,26652087-26652290,26652392-26652542,
26653355-26653399,26653528-26653598,26653678-26653763,
26653976-26654078,26654300-26654406
Length = 292
Score = 27.9 bits (59), Expect = 6.6
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +3
Query: 276 SGIPQTNVGKSEIINEHVNLFANLEDAI--KTTNKE-HDKE--VKAKQEEYEKQIGYLTY 440
SG + K E + + N + E I K TN + +D + +KA +EEYEK Y+
Sbjct: 159 SGSTEILYRKPESVADVENKVNDAESMIPPKETNGQGNDAQGAIKASKEEYEKLPPYMKT 218
Query: 441 LG--QDTNEALKKKNWY 485
L ++ EA+ K N Y
Sbjct: 219 LATWEELQEAISKLNSY 235
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 462 LHLYLVQDKLNSQFVFHILLVWPLPLYHV 376
LH+ +VQ++L ++ ++++ P +YHV
Sbjct: 370 LHMEIVQERLEREYNLNLIITAPSVVYHV 398
>03_06_0125 +
31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 372 KEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKK 476
KEH VK ++ + ++ +L L Q+T E ++++
Sbjct: 491 KEHQLSVKPTEKAADNELSWLNILSQETGENVQER 525
>02_04_0575 -
24000191-24000302,24000710-24000788,24001017-24001164,
24001704-24002100,24002188-24002268,24002688-24002836,
24003152-24003294,24003643-24003795,24003912-24003990,
24004113-24004175
Length = 467
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +3
Query: 303 KSEIINEHVNLF---ANLEDAIKTTNKEHDKEVKAKQEEYEK 419
+++I+ E+ NLF ANLE +K KE D E ++K+E YEK
Sbjct: 175 EAKIVLEN-NLFFAGANLEIKLK---KEFDAETESKKEAYEK 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,876
Number of Sequences: 37544
Number of extensions: 188877
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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