Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40422
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.63 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.9  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   7.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   7.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   7.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   7.8  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 370 RYSSKKKDVYQEKHKSSRSSKDY-DRQRYRDGSEEERGRKRAKR 498
           RYS + ++  Q+ +K+  S + Y +  + R     ERGR R  R
Sbjct: 271 RYS-RSREREQKSYKNENSYRKYRETSKERSRDRRERGRSREHR 313


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 369  QIQFEKEGRLPRETQVVQEQQGLRQAKVQRRVGGG 473
            Q Q +++ +  ++ Q  Q+QQ   QA+ +  VG G
Sbjct: 1211 QQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAG 1245



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +1

Query: 400  QEKHKSSRSSKDYDRQRYRDGSEEERGRKRAKRSPSRGAATTTSTIGMSGLGIRDG 567
            Q++ +  +  +   + R R+G         A  S SRGAA  +        GI DG
Sbjct: 1221 QQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQMSKVPRDVSEGIYDG 1276


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 VEKILSSVGIEADAEKLKKVITELNGK 211
           V K +  +GI    +K+K ++ EL  K
Sbjct: 28  VGKGMKVIGIAPQVDKMKTLVEELKSK 54


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 370 RYSSKKKDVYQEKHKSSRSSKDYDRQR--YRDGSEEERGRKR 489
           +Y++    +    H    +S  Y R+R   RD + E R + R
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDR 250


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 370 RYSSKKKDVYQEKHKSSRSSKDYDRQR--YRDGSEEERGRKR 489
           +Y++    +    H    +S  Y R+R   RD + E R + R
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDR 250


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 370 RYSSKKKDVYQEKHKSSRSSKDYDRQR--YRDGSEEERGRKR 489
           +Y++    +    H    +S  Y R+R   RD + E R + R
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDR 250


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 370 RYSSKKKDVYQEKHKSSRSSKDYDRQR--YRDGSEEERGRKR 489
           +Y++    +    H    +S  Y R+R   RD + E R + R
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDR 250


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 370 RYSSKKKDVYQEKHKSSRSSKDYDRQR--YRDGSEEERGRKR 489
           +Y++    +    H    +S  Y R+R   RD + E R + R
Sbjct: 198 KYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,902
Number of Sequences: 438
Number of extensions: 2096
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)