Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40417
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1602 - 28148255-28149413,28151927-28152087                       29   2.8  
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    28   6.4  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    28   6.4  

>08_02_1602 - 28148255-28149413,28151927-28152087
          Length = 439

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 536 TSRVTSRRDSAPWHGTNWNFRGTKFEPRPASHAEPATALCS-NKFRRSHALRAHL 697
           T    +R+ S P  G  WN R  KF+P         + +C+ N ++RSH  + ++
Sbjct: 304 TMAAAARKYSCPQEGCRWNRRHAKFQPL-------KSVICAKNHYKRSHCPKMYV 351


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 8   LPIFSKVTRGCGETTAVCAAAPCDLDN 88
           L IF+K   GC +   +C + PCD  N
Sbjct: 508 LSIFTKRYIGCHDLMGLCRSLPCDFGN 534


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 87  LSKSQGAAAQTAVVSPQP 34
           L+KS G  +QTAVV PQP
Sbjct: 673 LTKSSGQQSQTAVVEPQP 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,712,246
Number of Sequences: 37544
Number of extensions: 368208
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)