Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40417
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29913| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                31   1.2  
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_52895| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   8.7  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   28   8.7  

>SB_29913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 496 VNRQIRWF----WLIRAHESRHKSARQCAMARD-QLEF*RHEI 609
           +N ++RWF    W   A  +RH SA QC  ++  Q  F R E+
Sbjct: 52  INGEVRWFSARVWKFHALPARHGSAMQCGTSKGIQESFWRREV 94


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +2

Query: 533 PTSRVTSRRDSAPWHG-TNWNFRGTKFEPRPASHAEPATALCSNKFRRSHALRAHLPET 706
           P    TSR++ +   G TN     T     P  H EP T +       S   R HLP T
Sbjct: 221 PPGPTTSRQNVSGQAGPTNMTQSSTSHSSTPRHHGEPQTTISITSIISSAIPRGHLPTT 279


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 463  NFFVSTSKSCYVNRQIRWFWLIRAHESR 546
            NFF+ T K    +R ++W+W+++ +ESR
Sbjct: 1460 NFFI-TKKPEDTSRALQWYWVVQENESR 1486


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 525 NSGPRVASQVGATVRHGTGPIGILEARNSSPDQ-RRTRSQQQLYA 656
           ++G     Q  A +RHG G +   + R +SP   RRTR  Q + A
Sbjct: 67  DNGDTYTGQWQAGMRHGKGELVTADGRRTSPPHLRRTREAQPMNA 111


>SB_52895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 646 CCWLRVRRWSGLEFRASKIPIGP-VP--WRTVAPTCDATRGPELAKTTEFVG 500
           C WL V    G +FRA  +  GP +P  W        A RGPE+  +  FVG
Sbjct: 41  CSWLFV----GQKFRAHGMTSGPEIPCSWHDKNSVLMAVRGPEIPCSWLFVG 88


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 532  AHESRHKSARQCAMARDQLEF*RHEIRAQTSVARGASNSSMLK*VSSVTRAPSTSPR 702
            ++E R K+    AMA    E  R   +  +S+     N   +K VSS  +AP TS R
Sbjct: 1516 SNEDRIKAVSSSAMAPKTSE--RFTTKPGSSIDAPTGNKHRIKAVSSSVKAPKTSER 1570


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 532 AHESRHKSARQCAMARDQLEF*RHEIRAQTSVARGASNSSMLK*VSSVTRAPSTSPR 702
           ++E R K+    AMA    E  R   +  +S+     N   +K VSS  +AP TS R
Sbjct: 387 SNEDRIKAVSSSAMAPKTSE--RFTTKPGSSIDAPTGNKHRIKAVSSSVKAPKTSER 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,934,832
Number of Sequences: 59808
Number of extensions: 451615
Number of successful extensions: 1052
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)