Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40417
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    31   0.82 
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    29   3.3  
Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 485 FEVLTKKFPHFFTNEIKQVSISIFC*CISFVV-VTEYTINS*SLSKY 348
           F+V T +    F   +K  SISI+  C+SF+V V  YT++    S+Y
Sbjct: 83  FDVATSQESEAFHVNLKTYSISIYLLCVSFMVCVLSYTLSLRISSEY 129


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 677  VTDETYLSIELLL-APRATLVWARISCL*NSNWSRAMAHCRADL*RDSWARISQNH-RIC 504
            V DE  +  E+ +  P+  L WA  SC+ +SN+    A C       S   I +N  R+C
Sbjct: 2110 VEDEDKIPYEIAVDPPKGKLFWASSSCIKSSNYYGTEAKCIVSKSSISAIAIDENRSRLC 2169


>Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical
           protein T26H2.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 211 FCPYEVYSAAVINYVNNTVGSL*RFETSVAN 303
           F   E +S  +  Y   TVGSL +FE S+AN
Sbjct: 81  FISMESFSCVIALYRMTTVGSLEKFEQSLAN 111


>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 516 VLANSGPRVASQVGATVRHGTGPIGILEARNSSPDQRR 629
           V A S  R    +   +  GTG + I +A N++ D+RR
Sbjct: 97  VRAESARRAMEDMADYLNSGTGGVAIFDATNTTKDRRR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,909
Number of Sequences: 27780
Number of extensions: 332426
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)