Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40412
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.97 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   5.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   5.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   5.2  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 633 LPVVVPVASQCRFAWNLSMDEWVSLRGSCSWSRH 532
           +PV VPV   C      SM+ W+S++      RH
Sbjct: 361 IPVPVPVPIYCGNFPPRSMEPWISMQEQIPRFRH 394


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 650 NTCWFLNSVTSKRTRFLDDTVK 715
           NTC   NS T+     L DTVK
Sbjct: 170 NTCSISNSYTNGCVEALKDTVK 191


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 103 EDKVKAAVQEACDVLPDALNGECKE 177
           E +  A   E   VLPDAL  +CK+
Sbjct: 54  EGRCTAEGNELKRVLPDALATDCKK 78


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 103 EDKVKAAVQEACDVLPDALNGECKE 177
           E +  A   E   VLPDAL  +CK+
Sbjct: 54  EGRCTAEGNELKRVLPDALATDCKK 78


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 103 EDKVKAAVQEACDVLPDALNGECKE 177
           E +  A   E   VLPDAL  +CK+
Sbjct: 54  EGRCTAEGNELKRVLPDALATDCKK 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,770
Number of Sequences: 438
Number of extensions: 3737
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)