Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40411
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.3  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   9.9  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 655 PIKTTGPRLGHFTNILNHINKQYNVTR 575
           P+  + PR  H  N+L   N++ NV R
Sbjct: 227 PMSFSSPRRRHSINLLEEDNQKPNVCR 253


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 265 CRCPSGSVSSLCYGIID 215
           C+CP G V   C G I+
Sbjct: 284 CKCPPGFVGPRCEGDIN 300



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 265 CRCPSGSVSSLC 230
           C CPSG++  +C
Sbjct: 246 CSCPSGTLGYIC 257


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -2

Query: 189 IPVHSFFAILASSMSSK*TKQNPRERPVFASITTCTLSTGPYLEKI 52
           I +  F+A   + M  +    N  E P    + +  L+  PY EK+
Sbjct: 387 IAMKLFWAQYTNKMIDRLKNANNNELPEHVIMWSSPLTESPYFEKL 432


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 91  NLHFVNGSILRKDMVYLLFSCI 26
           NL  + G  +RK++ YLL   I
Sbjct: 86  NLKLLKGRKIRKNLYYLLLFVI 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,272
Number of Sequences: 336
Number of extensions: 2804
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)