Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40409
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 58 9e-10
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 38 0.001
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 38 0.001
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 38 0.001
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 34 0.023
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 33 0.054
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 30 0.38
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 27 3.5
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 27 3.5
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 4.7
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.7
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 26 4.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 4.7
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.2
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 25 8.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 8.2
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.2
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 58.4 bits (135), Expect = 9e-10
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +1
Query: 592 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMV 681
KEHVN+VFIGHVDAGKST+GG I+ LTGMV
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
+K H+NVV IGHVD+GKST G ++ G
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
+K H+NVV IGHVD+GKST G ++ G
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
+K H+NVV IGHVD+GKST G ++ G
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 490 NEPEEEDWIHKRMVNXXXXXXXXXXXRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSL 669
N E ++ K+ + + + + K V++V GHVD+GKST+ G+IM
Sbjct: 141 NSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFE 200
Query: 670 TGMV 681
G +
Sbjct: 201 LGEI 204
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 32.7 bits (71), Expect = 0.054
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 589 KKEHVNVVFIGHVDAGKSTIGGQI 660
KK HVN+ IGHVD GK+T+ I
Sbjct: 50 KKPHVNIGTIGHVDHGKTTLTAAI 73
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 604 NVVFIGHVDAGKSTIGGQIMSLTGMV 681
N I H+D GKST+ I+ LTG++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVI 85
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 573 RRYTKQKRTCKCSIYRTCRCRKVDYWWSNNVTHWNG 680
R+ ++ +TCKC T RC K +N +WNG
Sbjct: 290 RKNSEVSKTCKCLQKETIRCNK-----KSNCYNWNG 320
>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 100
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 64 NNLVFFPG*LKLFRFC 17
NNLVFF G LFRFC
Sbjct: 85 NNLVFFMGKCDLFRFC 100
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 213 FPSFSKPSQASDSTIPLPPPRNQKAVLRIQPG 308
FP+ A+D +PP NQ + R++PG
Sbjct: 175 FPTLQPSFPAADFCHSIPPQWNQLSFFRVKPG 206
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 577 DTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMV 681
D + K+ N+ H+D+GK+T +++ TG +
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 571 VEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 681
V + K +V N+ I HVD GKST+ ++ G++
Sbjct: 9 VRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 377 PRVEEPPPTTASVPPDVSPTADSWEVEADDALLTPEET 490
PR+ + PT + DVS T + VE DA + P ++
Sbjct: 7 PRLYDMSPTESKKQEDVSETELVYPVELADATIQPSKS 44
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 377 PRVEEPPPTTASVPPDVSPTADSWEVEADDALLTPEETMNRKK 505
PR+ E PP+T+SV + S T + V D L E T+ K
Sbjct: 80 PRINEIPPSTSSV--EKSTTIPNSSVVLDHLLNEGENTLEEVK 120
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 571 VEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 681
V + K +V N+ I HVD GKST+ ++ G++
Sbjct: 9 VRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +1
Query: 604 NVVFIGHVDAGKSTIGGQIMSLTGMV 681
N + HVD GK+T+ +++ G++
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGII 46
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 568 RVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSL 669
++E+ K + + V+ +G D+GKSTI QI L
Sbjct: 23 QIENASKKDKKIYKVLLLGASDSGKSTISKQIKIL 57
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 253 VLSLA*EGL-EKEGKKNLATTFNVEIFEDTSLESFAPFSPIISASFS 116
V+SLA L KE K + IFE+ +E P + + S SFS
Sbjct: 526 VMSLAFRTLINKEQNKQEVVMISARIFENVDIEKGLPANDMPSYSFS 572
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 154 FAPFSPIISASFSHESGAPLL 92
F+P +P + S++H + APLL
Sbjct: 282 FSPINPYYAKSWNHTASAPLL 302
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 126 AEIIGEKGAKDSNDVSSKISTLNVVARFFFPSFSKPSQASDSTIPLPPPRNQK 284
A I+G+ + N +S+ I ++V+ +F+ S K + + L +N+K
Sbjct: 144 ATIVGQVSGSEHN-LSTAIEQVDVIVNYFYDSSEKFLELGNKVQTLGKAKNKK 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,330
Number of Sequences: 5004
Number of extensions: 41083
Number of successful extensions: 178
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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