Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40409
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    37   2e-04
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    37   2e-04
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.41 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.54 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
           +K H+N+V IGHVD+GKST  G ++   G
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
           +K H+N+V IGHVD+GKST  G ++   G
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 592 KEHVNVVFIGHVDAGKSTI 648
           K H  V  +GHVD GK+T+
Sbjct: 143 KRHPIVTIMGHVDHGKTTL 161


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 586 SKKEHVNVVFIGHVDAGKSTI 648
           S++  +N+  IGHV  GKSTI
Sbjct: 38  SRQATINIGTIGHVAHGKSTI 58


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 523 SCVSNLLLPVHCFFRCE*CIISLNFPAVCSGRDI 422
           +C+S L + V+     E  +   +FPA  +GR++
Sbjct: 177 ACISILAIKVYYISCPEISVNFAHFPATPTGREV 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,951
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)